Index

A

AbstractXml (class in Sisyphe.core.sisypheXml) acpc (Sisyphe.core.sisypheVolume.SisypheVolume property) acquisition (Sisyphe.core.sisypheVolume.SisypheVolume property) activeContour() (Sisyphe.core.sisypheROI.SisypheROIDraw method) activeContourSegmentation() (Sisyphe.core.sisypheROI.SisypheROIDraw method) activeThresholdContour() (Sisyphe.core.sisypheROI.SisypheROIDraw method) addAlphaTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) addBundleToSisypheTractCollection() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) addColorTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) addCovariableByCondition() (Sisyphe.core.sisypheStatistics.SisypheDesign method) addCovariableByGroup() (Sisyphe.core.sisypheStatistics.SisypheDesign method) addCovariableBySubject() (Sisyphe.core.sisypheStatistics.SisypheDesign method) addDicomSeriesFilenames() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) addGlobalCovariable() (Sisyphe.core.sisypheStatistics.SisypheDesign method) addGradientTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) addHighPassToCondition() (Sisyphe.core.sisypheStatistics.SisypheDesign method) addHRFBoxCarModelToCondition() (Sisyphe.core.sisypheStatistics.SisypheDesign method) addInstance() (Sisyphe.core.sisypheMesh.SisypheMesh class method) (Sisyphe.core.sisypheROI.SisypheROI class method) addPrefixSuffixToFilename() (in module Sisyphe.core.sisypheConstants) addPrefixToFilename() (in module Sisyphe.core.sisypheConstants) addROI() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) addRTDoseFilename() (Sisyphe.core.sisypheDicom.ImportFromRTDose method) addRTStructFilename() (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) addSuffixToFilename() (in module Sisyphe.core.sisypheConstants) addTransformToVolume() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) addTranslations() (Sisyphe.core.sisypheTransform.SisypheTransform method) affineToDisplacementField() (Sisyphe.core.sisypheTransform.SisypheTransform method)

allocate() (Sisyphe.core.sisypheImage.SisypheImage method) AngleWidget (class in Sisyphe.core.sisypheTools) anonymize() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) append() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheRecent.SisypheRecent method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) appendBundle() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) appendFileObsTo() (Sisyphe.core.sisypheStatistics.SisypheDesign method) appendIdentityTransformWithVolume() (Sisyphe.core.sisypheTransform.SisypheTransforms method) appendSliceToLIFO() (Sisyphe.core.sisypheROI.SisypheROIDraw method) appendTracts() (Sisyphe.core.sisypheTracts.SisypheBundle method) appendVolumeToLIFO() (Sisyphe.core.sisypheROI.SisypheROIDraw method) appendXSliceToLIFO() (Sisyphe.core.sisypheROI.SisypheROIDraw method) appendYSliceToLIFO() (Sisyphe.core.sisypheROI.SisypheROIDraw method) appendZSliceToLIFO() (Sisyphe.core.sisypheROI.SisypheROIDraw method) applyAtlasTransformToStreamlines() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) applyInverseToPoint() (Sisyphe.core.sisypheTransform.SisypheTransform method) applyToPoint() (Sisyphe.core.sisypheTransform.SisypheTransform method) applyTransform() (Sisyphe.core.sisypheMesh.SisypheMesh method) applyTransformToStreamlines() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) atlasRegistration() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) autocorrelationsEstimate() (in module Sisyphe.core.sisypheStatistics) autoWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method)

B

backgroundSegment() (Sisyphe.core.sisypheROI.SisypheROIDraw method) backgroundSegmentSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) backupDatabase() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) backupIdentity() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) backupPatient() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) binaryAND() (Sisyphe.core.sisypheROI.SisypheROIDraw method) binaryINTERSECTION() (Sisyphe.core.sisypheROI.SisypheROIDraw method) binaryNAND() (Sisyphe.core.sisypheROI.SisypheROIDraw method) binaryNOT() (Sisyphe.core.sisypheROI.SisypheROIDraw method) binaryNotSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) binaryOR() (Sisyphe.core.sisypheROI.SisypheROIDraw method) binaryUNION() (Sisyphe.core.sisypheROI.SisypheROIDraw method) binaryXOR() (Sisyphe.core.sisypheROI.SisypheROIDraw method) blobFilterExtent() (Sisyphe.core.sisypheROI.SisypheROIDraw method) blobFilterExtentSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) blobRemove() (Sisyphe.core.sisypheROI.SisypheROIDraw method) blobRemoveSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) blobSelect() (Sisyphe.core.sisypheROI.SisypheROIDraw method) blobSelectSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) BoxWidget (class in Sisyphe.core.sisypheTools) brush() (Sisyphe.core.sisypheROI.SisypheROIDraw method) bundleCentersOfMass() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleCentroidDistanceSelection() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleClusterConfidence() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleClusterConfidenceFiltering() (Sisyphe.core.sisypheTracts.SisypheStreamlines method)

bundleClusterConfidenceStatistics() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleClustering() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleCosineDistanceBetweenEndVectors() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleCount() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) bundleEuclideanDistanceBetweenEndPoints() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleFastClustering() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleFromBundleModel() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleIntersectPlane() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleIntersectSphere() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleLengths() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleLengthStatistics() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleMajorClusterCentroid() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleMeanCurvatures() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleMeanCurvatureStatistics() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleRoiSelection() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleScalarHistogramFromVolume() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleScalarsFromVolume() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleScalarStatisticsFromVolume() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleStreamlinesLongerThan() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleStreamlinesShorterThan() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleToConnectivityMatrix() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleToDensityMap() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleToMesh() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleToPathLengthMap() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) bundleToRoi() (Sisyphe.core.sisypheTracts.SisypheStreamlines method)

C

calcErrors() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) calcMask() (Sisyphe.core.sisypheStatistics.SisypheDesign class method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) calcTransform() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) cast() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) CCVAL (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition attribute) changeStreamlinesSampling() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) changeStreamlinesStepSize() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) clean() (Sisyphe.core.sisypheMesh.SisypheMesh method) clear() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) (Sisyphe.core.sisypheDicom.ExportToDicom method) (Sisyphe.core.sisypheDicom.ExportToRTStruct method) (Sisyphe.core.sisypheDicom.ImportFromDicom method) (Sisyphe.core.sisypheDicom.ImportFromRTDose method) (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) (Sisyphe.core.sisypheDicom.XmlDicom method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheRecent.SisypheRecent method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) clearAffineAtlasTransformation() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) clearAlphaTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) clearBorderBlob() (Sisyphe.core.sisypheROI.SisypheROIDraw method) clearBorderBlobs() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) clearBorderBlobSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) clearClipboard() (Sisyphe.core.sisypheROI.SisypheROIDraw method) clearColorTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) clearDatabase() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) clearDicomSeriesFilenames() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) clearFileObsFrom() (Sisyphe.core.sisypheStatistics.SisypheDesign method) clearGradientTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) clearLIFO() (Sisyphe.core.sisypheROI.SisypheROIDraw method) clearMesh() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) clearMoving() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) clearMovingROI() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) clearMovingStreamlines() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) clearSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) clearXmlDicom() (Sisyphe.core.sisypheVolume.SisypheVolume method) clusterCorrectedpvalueToExtent() (in module Sisyphe.core.sisypheStatistics) clusterUncorrectedpvalueToExtent() (in module Sisyphe.core.sisypheStatistics) combinePolyData() (Sisyphe.core.sisypheMesh.SisypheMesh method) compareDataElementsBetweenDatasets() (in module Sisyphe.core.sisypheImageIO) componentsToSisypheVolumeCollection() (Sisyphe.core.sisypheVolume.SisypheVolume method) composeRotations() (Sisyphe.core.sisypheTransform.SisypheTransform method) composeTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) compressStreamlines() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) computeFitting() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDSIDModel method) (Sisyphe.core.sisypheTracts.SisypheDSIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSAModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel method) computeTracking() (Sisyphe.core.sisypheTracts.SisypheTracking method) conjunctionFisher() (in module Sisyphe.core.sisypheStatistics) conjunctionMudholkar() (in module Sisyphe.core.sisypheStatistics) conjunctionStouffer() (in module Sisyphe.core.sisypheStatistics) conjunctionTippett() (in module Sisyphe.core.sisypheStatistics) conjunctionWorsley() (in module Sisyphe.core.sisypheStatistics) convertImageToAxialOrientation() (in module Sisyphe.core.sisypheImageIO) convertRangeWindowToInt() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) convertSITKtoVTK() (in module Sisyphe.core.sisypheImageIO) convertToSisypheROI() (Sisyphe.core.sisypheMesh.SisypheMesh method) convertToSisypheVolume() (Sisyphe.core.sisypheMesh.SisypheMesh method) convertToVTKImage() (Sisyphe.core.sisypheMesh.SisypheMesh method) convertVTKtoSITK() (in module Sisyphe.core.sisypheImageIO) convolveModelHRF() (in module Sisyphe.core.sisypheStatistics) copy() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) copyAttributesFrom() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheVolume.SisypheVolume method) copyAttributesTo() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheVolume.SisypheVolume method) copyBlob() (Sisyphe.core.sisypheROI.SisypheROIDraw method) copyBlobSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) copyColorFromROI() (Sisyphe.core.sisypheMesh.SisypheMesh method) copyComponent() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) copyDataElementValuesToClipboard() (Sisyphe.core.sisypheDicom.XmlDicom method)

copyFilenameFrom() (Sisyphe.core.sisypheVolume.SisypheVolume method) copyFilenameTo() (Sisyphe.core.sisypheVolume.SisypheVolume method) copyFilesToPatient() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) copyFileToPatient() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) copyFrom() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTransform.SisypheTransform method) copyFromANTSImage() (Sisyphe.core.sisypheImage.SisypheBinaryImage method) (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) copyFromDict() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) copyFromDisplacementFieldImage() (Sisyphe.core.sisypheTransform.SisypheTransform method) copyFromITKImage() (Sisyphe.core.sisypheImage.SisypheBinaryImage method) (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) copyFromList() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) copyFromMatplotlibColormap() (Sisyphe.core.sisypheLUT.SisypheLut method) copyFromNibabelImage() (Sisyphe.core.sisypheImage.SisypheImage method) copyFromNumpy() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) copyFromNumpyArray() (Sisyphe.core.sisypheImage.SisypheBinaryImage method) (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) copyFromSITKImage() (Sisyphe.core.sisypheImage.SisypheBinaryImage method) (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) copyFromVTKImage() (Sisyphe.core.sisypheImage.SisypheBinaryImage method) (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) copyPropertiesFrom() (Sisyphe.core.sisypheVolume.SisypheVolume method) copyPropertiesFromMesh() (Sisyphe.core.sisypheMesh.SisypheMesh method) copyPropertiesFromVtkActor() (Sisyphe.core.sisypheMesh.SisypheMesh method) copyPropertiesFromVtkProperty() (Sisyphe.core.sisypheMesh.SisypheMesh method) copyPropertiesTo() (Sisyphe.core.sisypheVolume.SisypheVolume method) copySisypheMesh() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) copySisypheMeshes() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) copySisypheROI() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) copySisypheROIs() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) copySisypheVolume() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) copySisypheVolumes() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) copySlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) copyTo() (Sisyphe.core.sisypheTransform.SisypheTransform method) copyToANTSImage() (Sisyphe.core.sisypheImage.SisypheImage method) copyToDict() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) copyToITKImage() (Sisyphe.core.sisypheImage.SisypheImage method) copyToList() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) copyToMatplotlibColormap() (Sisyphe.core.sisypheLUT.SisypheLut method) copyToMultiComponentSisypheVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) copyToNibabelImage() (Sisyphe.core.sisypheImage.SisypheImage method) copyToNumpy() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) copyToNumpyArray() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) copyToSisypheVolume() (Sisyphe.core.sisypheROI.SisypheROI method) copyToSITKImage() (Sisyphe.core.sisypheImage.SisypheImage method) copyToVTKImage() (Sisyphe.core.sisypheImage.SisypheImage method) count() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) createCube() (Sisyphe.core.sisypheMesh.SisypheMesh method) createFromROI() (Sisyphe.core.sisypheMesh.SisypheMesh method) createIsosurface() (Sisyphe.core.sisypheMesh.SisypheMesh method) createLine() (Sisyphe.core.sisypheMesh.SisypheMesh method) createOuterSurface() (Sisyphe.core.sisypheMesh.SisypheMesh method) createPatient() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) createPatients() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) createSphere() (Sisyphe.core.sisypheMesh.SisypheMesh method) createTube() (Sisyphe.core.sisypheMesh.SisypheMesh method) createXML() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheSheet.SisypheSheet method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDSIDModel method) (Sisyphe.core.sisypheTracts.SisypheDSIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSAModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) (Sisyphe.core.sisypheVolume.SisypheVolume method) createXMLOld() (Sisyphe.core.sisypheROI.SisypheROI method) cutBlob() (Sisyphe.core.sisypheROI.SisypheROIDraw method) cutBlobSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) cutSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method)

D

decimate() (Sisyphe.core.sisypheMesh.SisypheMesh method) deepCopy() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTracts.SisypheTract method) deleteFileFromPatient() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) deleteFilesFromPatient() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) dicom (Sisyphe.core.sisypheVolume.SisypheVolume property) DicomToXmlDicom (class in Sisyphe.core.sisypheDicom) DicomUIDGenerator (class in Sisyphe.core.sisypheDicom) difference() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) dilate() (Sisyphe.core.sisypheMesh.SisypheMesh method) display (Sisyphe.core.sisypheVolume.SisypheVolume property) DistanceWidget (class in Sisyphe.core.sisypheTools) downloadFromHost() (in module Sisyphe.core.sisypheDownload) drawCube() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method)

drawDisk() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) drawEllipse() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) drawLine() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) drawParallelepiped() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) drawPolygon() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) drawRectangle() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) drawSphere() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) drawSquare() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) duplicateBundle() (Sisyphe.core.sisypheTracts.SisypheTractCollection method)

E

erase() (Sisyphe.core.sisypheROI.SisypheROIDraw method) erode() (Sisyphe.core.sisypheMesh.SisypheMesh method) estimate() (Sisyphe.core.sisypheStatistics.SisypheDesign method) euclideanBlobDilate() (Sisyphe.core.sisypheROI.SisypheROIDraw method) euclideanBlobErode() (Sisyphe.core.sisypheROI.SisypheROIDraw method) euclideanDilate() (Sisyphe.core.sisypheROI.SisypheROIDraw method) euclideanErode() (Sisyphe.core.sisypheROI.SisypheROIDraw method) execute() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) (Sisyphe.core.sisypheDicom.ExportToDicom method) (Sisyphe.core.sisypheDicom.ExportToRTStruct method) (Sisyphe.core.sisypheDicom.ImportFromDicom method) (Sisyphe.core.sisypheDicom.ImportFromRTDose method) (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) expectedVoxelsPerCluster() (in module Sisyphe.core.sisypheStatistics)

ExportToDicom (class in Sisyphe.core.sisypheDicom) ExportToRTStruct (class in Sisyphe.core.sisypheDicom) extendPosition1() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition1ToMeshCenter() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition1ToMeshCenterOfMass() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition1ToMeshSurface() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition1ToPlane() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition2() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition2ToMeshCenter() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition2ToMeshCenterOfMass() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition2ToMeshSurface() (Sisyphe.core.sisypheTools.LineWidget method) extendPosition2ToPlane() (Sisyphe.core.sisypheTools.LineWidget method) extentToClusterCorrectedpvalue() (in module Sisyphe.core.sisypheStatistics) extentToClusterUncorrectedpvalue() (in module Sisyphe.core.sisypheStatistics) extractDataElementValuesFromDatasets() (in module Sisyphe.core.sisypheImageIO) extractingValue() (Sisyphe.core.sisypheROI.SisypheROIDraw method) extractingValueBlob() (Sisyphe.core.sisypheROI.SisypheROIDraw method) extractingValueBlobSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) extractingValueSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method)

F

fieldsFromDict() (Sisyphe.core.sisypheSettings.SisypheSettings method) fieldsToDict() (Sisyphe.core.sisypheSettings.SisypheSettings method) fillHoles() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) fillHolesAllSlices() (Sisyphe.core.sisypheROI.SisypheROIDraw method) fillHolesSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) fillWith() (Sisyphe.core.sisypheImage.SisypheImage method)

filter() (Sisyphe.core.sisypheMesh.SisypheMesh method) findKeywords() (Sisyphe.core.sisypheDicom.XmlDicom method) flip() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) flipImageToVTKDirectionConvention() (in module Sisyphe.core.sisypheImageIO) flipSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) fromIndexes() (Sisyphe.core.sisypheROI.SisypheROI method) fromLabelVolume() (Sisyphe.core.sisypheROI.SisypheROICollection method)

G

geFileExt() (Sisyphe.core.sisypheStatistics.SisypheDesign class method) getAbsFolderFromIdentity() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) getAC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getACPC() (Sisyphe.core.sisypheVolume.SisypheVolume method) getACPCDistance() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getAcquisition() (Sisyphe.core.sisypheVolume.SisypheVolume method) getAcquisitionFromDicom() (in module Sisyphe.core.sisypheDicom) getActiveContourAdvectionWeight() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourAlgorithm() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourConvergence() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourCurvatureWeight() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourFactor() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourNumberOfIterations() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourPropagationWeight() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourSeedRadius() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourSigma() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveContourThresholds() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getActiveScalars() (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getActor() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTracts.SisypheTract method) getAffineAtlasTransformation() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getAffineParametersFromMatrix() (Sisyphe.core.sisypheTransform.SisypheTransform method) getAffineTransform() (Sisyphe.core.sisypheXml.XmlStreamlines method) getAge() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) getAgeAt() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) getAgeAtScanDate() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) getAgeCovariable() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getAgeCovariableAsString() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getAllMarkers() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) getAlpha() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) getAlphaFromGradientValue() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getAlphaFromValue() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getAlphaTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getAlphaTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getAlphaTransferSize() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getAmbient() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getAngle() (Sisyphe.core.sisypheTools.AngleWidget method) getAngleVector() (Sisyphe.core.sisypheTransform.SisypheTransform method) getANTSTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) getArgmax() (Sisyphe.core.sisypheImage.SisypheImage method) getArgmaxVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getArgminVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getArrayID() (Sisyphe.core.sisypheVolume.SisypheVolume method) getAtlasBundleDirectory() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) getAtlasBundleFilenameFromName() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) getAtlasBundleFilenameFromShortName() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) getAtlasBundleNames() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) getAtlasBundleShortNames() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) getAtlasTransformation() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getATROPOSPath() (in module Sisyphe.core.sisypheConstants) getATROPOSTemplateTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getAttributes() (Sisyphe.core.sisypheSettings.SisypheSettings class method) getAutoCorrelations() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) getAutocorrelations() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getAxialDiffusivity() (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getBackgroundThreshold() (Sisyphe.core.sisypheImage.SisypheImage method) getBackupDicomDirectory() (Sisyphe.core.sisypheDicom.ExportToDicom method) getBackupXmlDicomDirectory() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) getBasename() (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getBeta() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getBins() (Sisyphe.core.sisypheROI.SisypheROIHistogram method) getBitmapCapture() (Sisyphe.core.sisypheVolume.SisypheVolume method) getBitmapExt() (in module Sisyphe.core.sisypheConstants) getBitmapPreview() (Sisyphe.core.sisypheLUT.SisypheLut method) getBlobCount() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getBlobLargerThan() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getBoundingBox() (Sisyphe.core.sisypheImage.SisypheImage method) getBounds() (Sisyphe.core.sisypheMesh.SisypheMesh method) getBoxCarModel() (in module Sisyphe.core.sisypheStatistics) getBrainVoyagerVMRExt() (in module Sisyphe.core.sisypheConstants) getBrainVoyagerVOIExt() (in module Sisyphe.core.sisypheConstants) getBrushRadius() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getBrushType() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getBundle() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getBundleName() (Sisyphe.core.sisypheTracts.SisypheTracking method) getBundleNames() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getBundles() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getCenter() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTransform.SisypheTransform method) getCenterOfMass() (Sisyphe.core.sisypheMesh.SisypheMesh method) getCentroid() (Sisyphe.core.sisypheImage.SisypheImage method) getClearBorderBlobs() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getCodeToModalityDict() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getColor() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) getColorFromValue() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getColormapFromName() (Sisyphe.core.sisypheLUT.SisypheLut class method) getColormapList() (Sisyphe.core.sisypheLUT.SisypheLut class method) getColorRepresentation() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getColorRepresentationAsString() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getColorTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getColorTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getColorTransferSize() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getComponentAllZero() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentArgmax() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentArgmin() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentKurtosis() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentMax() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentMean() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentMedian() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentMin() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentNumberOfNonZero() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentPercentile() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentRange() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponents() (Sisyphe.core.sisypheXml.XmlVolume method) getComponentSkewness() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getComponentStd() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getCompression() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getConditionCount() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getConditionName() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getConditionNames() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getConfidenceConnectedIter() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getConfidenceConnectedSigma() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getContrast() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) getCreationDate() (Sisyphe.core.sisypheDatabase.SisypheDatabase class method) getCreationDateCode() (Sisyphe.core.sisypheDatabase.SisypheDatabase class method) getCrop() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getCroppedProjection() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getCTModalityTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getCTSequences() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getCTSOPClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getCurrentFrameOfReferenceUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getCurrentInstanceIndex() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getCurrentInstanceUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getCurrentSeriesIndex() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getCurrentSeriesUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getCurrentStudyID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getCurrentStudyUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getDatabasePath() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) getDataElement() (Sisyphe.core.sisypheDicom.XmlDicom method) getDataElementValue() (Sisyphe.core.sisypheDicom.XmlDicom method) getDataElementVM() (Sisyphe.core.sisypheDicom.XmlDicom method) getDataElementVR() (Sisyphe.core.sisypheDicom.XmlDicom method) getDataFrame() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) getDataset() (Sisyphe.core.sisypheDicom.XmlDicom method) getDatatype() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheXml.XmlVolume method) getDatatypeAs() (Sisyphe.core.sisypheImage.SisypheImage method) getDatatypes() (in module Sisyphe.core.sisypheConstants) getDateOfBirthday() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) getDateOfBirthdayAsDate() (Sisyphe.core.sisypheXml.XmlVolume method) getDateOfBirthdayAsString() (Sisyphe.core.sisypheXml.XmlVolume method) getDateOfScan() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) getDateOfScanAsDate() (Sisyphe.core.sisypheXml.XmlVolume method) getDateOfScanAsString() (Sisyphe.core.sisypheXml.XmlVolume method) getDefaultDate() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity class method) getDefaultLutDirectory() (Sisyphe.core.sisypheLUT.SisypheLut class method) getDefaultName() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) getDefaultSettings() (Sisyphe.core.sisypheSettings.SisypheDialogsSettings class method) (Sisyphe.core.sisypheSettings.SisypheFunctionsSettings class method) (Sisyphe.core.sisypheSettings.SisypheSettings class method) (Sisyphe.core.sisypheSettings.SisypheTooltips class method) getDefaultXmlDicomFilename() (Sisyphe.core.sisypheDicom.DicomToXmlDicom class method) getDegreesOfFreedom() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) getDepth() (Sisyphe.core.sisypheImage.SisypheImage method) getDesignMatrix() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getDeviatropic() (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getDicomExt() (in module Sisyphe.core.sisypheConstants) getDicomFilenames() (Sisyphe.core.sisypheDicom.ImportFromDicom method) getDicomImageModalities() (in module Sisyphe.core.sisypheDicom) getDicomImagePositionPatient() (Sisyphe.core.sisypheDicom.ImportFromDicom method) getDicomModalities() (in module Sisyphe.core.sisypheDicom) getDicomRTModalities() (in module Sisyphe.core.sisypheDicom) getDicomSeriesFilenames() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) getDict() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getDiffuse() (Sisyphe.core.sisypheMesh.SisypheMesh method) getDiffusionParametersFromDicom() (in module Sisyphe.core.sisypheDicom) getDirections() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheXml.XmlVolume method) getDirname() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getDisplacementField() (Sisyphe.core.sisypheTransform.SisypheTransform method) getDisplay() (Sisyphe.core.sisypheVolume.SisypheVolume method) getDISTALPath() (in module Sisyphe.core.sisypheConstants) getDistance() (Sisyphe.core.sisypheTools.DistanceWidget method) getDistanceFromSurfaceToPoint() (Sisyphe.core.sisypheMesh.SisypheMesh method) getDistanceFromSurfaceToSurface() (Sisyphe.core.sisypheMesh.SisypheMesh method) getDistanceMap() (Sisyphe.core.sisypheROI.SisypheROI method) getDistances() (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) getDistancesToHandleWidget() (Sisyphe.core.sisypheTools.LineWidget method) getDistancesToLine() (Sisyphe.core.sisypheTools.LineWidget method) getDistancesToLineWidget() (Sisyphe.core.sisypheTools.LineWidget method) getDistancesToPlane() (Sisyphe.core.sisypheTools.LineWidget method) getDistancesToPoint() (Sisyphe.core.sisypheTools.LineWidget method) getDistanceToHandleWidget() (Sisyphe.core.sisypheTools.HandleWidget method) getDistanceToLine() (Sisyphe.core.sisypheTools.HandleWidget method) getDistanceToLineWidget() (Sisyphe.core.sisypheTools.HandleWidget method) getDistanceToPlane() (Sisyphe.core.sisypheTools.HandleWidget method) getDistanceToPoint() (Sisyphe.core.sisypheTools.HandleWidget method) getDOF() (in module Sisyphe.core.sisypheStatistics) getDWI() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) getDWIFOV() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getDWIMean() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) getDWIShape() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getDWISpacing() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getEdgeColor() (Sisyphe.core.sisypheMesh.SisypheMesh method) getEdgeQColor() (Sisyphe.core.sisypheMesh.SisypheMesh method) getEdgeVisibility() (Sisyphe.core.sisypheMesh.SisypheMesh method) getEffectInformations() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getEigenValues() (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getEigenVectors() (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getEquivalentTransformWithNewCenterOfRotation() (Sisyphe.core.sisypheTransform.SisypheTransform method) getEquivalentVolumeCenteredTransform() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getEquivalentVolumeCenteredTransform2() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getErrors() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) getErrorStatistics() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) getEuclideanDistanceFromAC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getEuclideanDistanceFromMidACPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getEuclideanDistanceFromPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getEulerNumber() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getExportFolder() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) getFA() (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel method) getFieldList() (Sisyphe.core.sisypheXml.AbstractXml method) getFieldNode() (Sisyphe.core.sisypheSettings.SisypheSettings method) getFieldNodes() (Sisyphe.core.sisypheXml.AbstractXml method) getFieldOfView() (Sisyphe.core.sisypheImage.SisypheImage method) getFieldValue() (Sisyphe.core.sisypheSettings.SisypheSettings method) getFieldValues() (Sisyphe.core.sisypheXml.AbstractXml method) getFieldVartype() (Sisyphe.core.sisypheSettings.SisypheSettings method) getFileCount() (Sisyphe.core.sisypheRecent.SisypheRecent method) getFileExt() (Sisyphe.core.sisypheDicom.DicomToXmlDicom class method) (Sisyphe.core.sisypheDicom.XmlDicom class method) (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox class method) (Sisyphe.core.sisypheImageAttributes.SisypheACPC class method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay class method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity class method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer class method) (Sisyphe.core.sisypheLUT.SisypheLut class method) (Sisyphe.core.sisypheMesh.SisypheMesh class method) (Sisyphe.core.sisypheROI.SisypheROI class method) (Sisyphe.core.sisypheSheet.SisypheSheet class method) (Sisyphe.core.sisypheTools.HandleWidget class method) (Sisyphe.core.sisypheTools.LineWidget class method) (Sisyphe.core.sisypheTools.ToolWidgetCollection class method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel class method) (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) (Sisyphe.core.sisypheTransform.SisypheTransform class method) (Sisyphe.core.sisypheTransform.SisypheTransforms class method) (Sisyphe.core.sisypheVolume.SisypheVolume class method) getFileList() (Sisyphe.core.sisypheRecent.SisypheRecent method) getFilename() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheSettings.SisypheSettings method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getFilenamePrefix() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getFilenameSuffix() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getFileObsCount() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getFileObsDict() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getFileObsFrom() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getFilesLastModifiedDate() (Sisyphe.core.sisypheDatabase.SisypheDatabase class method) getFillHoles() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getFilterExt() (Sisyphe.core.sisypheDicom.XmlDicom class method) (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox class method) (Sisyphe.core.sisypheImageAttributes.SisypheACPC class method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay class method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity class method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer class method) (Sisyphe.core.sisypheLUT.SisypheLut class method) (Sisyphe.core.sisypheMesh.SisypheMesh class method) (Sisyphe.core.sisypheROI.SisypheROI class method) (Sisyphe.core.sisypheSheet.SisypheSheet class method) (Sisyphe.core.sisypheStatistics.SisypheDesign class method) (Sisyphe.core.sisypheTools.HandleWidget class method) (Sisyphe.core.sisypheTools.LineWidget class method) (Sisyphe.core.sisypheTools.ToolWidgetCollection class method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel class method) (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) (Sisyphe.core.sisypheTransform.SisypheTransform class method) (Sisyphe.core.sisypheTransform.SisypheTransforms class method) (Sisyphe.core.sisypheVolume.SisypheVolume class method) getFirstname() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheXml.XmlVolume method) getFirstOrderTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) getFirstVectorDirection() (Sisyphe.core.sisypheImage.SisypheImage method) getFitAlgorithm() (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getFittedModel() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) getFlattenMatrix() (Sisyphe.core.sisypheTransform.SisypheTransform method) getFlip() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getFloatAlpha() (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) getFloatColor() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) getFloatStdDatatypes() (in module Sisyphe.core.sisypheConstants) getFolderFromIdentity() (Sisyphe.core.sisypheDatabase.SisypheDatabase class method) getFontBold() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getFontFamily() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) getFontItalic() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getFontSize() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getFOV() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) (Sisyphe.core.sisypheXml.XmlVolume method) getFrame() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheXml.XmlVolume method) getFrameAsString() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) getFrameList() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getFreeSurferExt() (in module Sisyphe.core.sisypheConstants) getGA() (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getGender() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheXml.XmlVolume method) getGFA() (Sisyphe.core.sisypheTracts.SisypheDSIDModel method) (Sisyphe.core.sisypheTracts.SisypheDSIModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSAModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel method) getGlobalFactorIndex() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getGradients() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) getGradientTable() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) getGradientTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getGradientTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getGradientTransferSize() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getGradientValueFromAlpha() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getGrayLevelCooccurrenceMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) getGrayLevelDependenceMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) getGrayLevelRunLengthMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) getGrayLevelSizeZoneMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) getGroupCount() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getGroupName() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getGroupNames() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getHandleLineWidth() (Sisyphe.core.sisypheTools.LineWidget method) getHandleSize() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) getHeight() (Sisyphe.core.sisypheImage.SisypheImage method) getHighPass() (in module Sisyphe.core.sisypheStatistics) getHistogram() (Sisyphe.core.sisypheImage.SisypheImage method) getHistograms() (Sisyphe.core.sisypheROI.SisypheROIHistogram method) getHRF() (in module Sisyphe.core.sisypheStatistics) getICBM152Path() (in module Sisyphe.core.sisypheConstants) getICBM152TemplateTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getICBM452Path() (in module Sisyphe.core.sisypheConstants) getICBM452TemplateTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getICBMfromWorld() (Sisyphe.core.sisypheVolume.SisypheVolume method) getICBMTransform() (Sisyphe.core.sisypheVolume.SisypheVolume method) getID() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) (Sisyphe.core.sisypheXml.XmlVolume method) getID_ATROPOS() (in module Sisyphe.core.sisypheConstants) getID_DISTAL() (in module Sisyphe.core.sisypheConstants) getID_ICBM152() (in module Sisyphe.core.sisypheConstants) getID_ICBM452() (in module Sisyphe.core.sisypheConstants) getID_NAC() (in module Sisyphe.core.sisypheConstants) getID_SPL() (in module Sisyphe.core.sisypheConstants) getID_SRI24() (in module Sisyphe.core.sisypheConstants) getIdentity() (Sisyphe.core.sisypheVolume.SisypheVolume method) getIdentityFromDicom() (in module Sisyphe.core.sisypheDicom) getIdentityFromFolder() (Sisyphe.core.sisypheDatabase.SisypheDatabase class method) getImageExt() (in module Sisyphe.core.sisypheConstants) getImplementationClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getImplementationVersionName() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getImportFolder() (Sisyphe.core.sisypheDicom.ImportFromDicom method) getInstancesCount() (Sisyphe.core.sisypheMesh.SisypheMesh class method) (Sisyphe.core.sisypheROI.SisypheROI class method) getInstanceTime() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getIntColor() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getIntensityStatistics() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getIntercept() (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheXml.XmlVolume method) getInterpolation() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getInterpolator() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getInterpolatorCodeFromName() (Sisyphe.core.sisypheTransform.SisypheApplyTransform class method) getInterpolatorNameFromCode() (Sisyphe.core.sisypheTransform.SisypheApplyTransform class method) getInterpolatorSITKCode() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getIntStdDatatypes() (in module Sisyphe.core.sisypheConstants) getInverseSITKTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) getInverseTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) getInverseVTKTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) getIsotropic() (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getITKImage() (Sisyphe.core.sisypheImage.SisypheImage method) getJsonExt() (in module Sisyphe.core.sisypheConstants) getKeywords() (Sisyphe.core.sisypheDicom.XmlDicom method) getKeywordsWithConstantValue() (Sisyphe.core.sisypheDicom.XmlDicom method) getKeywordsWithValueVariation() (Sisyphe.core.sisypheDicom.XmlDicom method) getKurtosis() (Sisyphe.core.sisypheImage.SisypheImage method) getLabel() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) getLabels() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) getLabelsFileExt() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getLabelsFilterExt() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getLastModifiedDate() (Sisyphe.core.sisypheDatabase.SisypheDatabase class method) getLastModifiedDateCode() (Sisyphe.core.sisypheDatabase.SisypheDatabase class method) getLastname() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheXml.XmlVolume method) getLBModalityTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getLBSequences() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getLegend() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getLEKSELLfromWorld() (Sisyphe.core.sisypheVolume.SisypheVolume method) getLEKSELLTransform() (Sisyphe.core.sisypheVolume.SisypheVolume method) getLength() (Sisyphe.core.sisypheTools.LineWidget method) getLibraryDataType() (in module Sisyphe.core.sisypheConstants) getLineToLineDistance() (Sisyphe.core.sisypheTools.LineWidget method) getLineWidth() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) (Sisyphe.core.sisypheXml.XmlStreamlines method) getList() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method)

getLocalMaxima() (Sisyphe.core.sisypheImage.SisypheImage method) getLongestStreamlineIndex() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getLUT() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheMesh.SisypheMesh method) getLut() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) (Sisyphe.core.sisypheXml.XmlStreamlines method) getLutExt() (in module Sisyphe.core.sisypheConstants) getLUTType() (Sisyphe.core.sisypheLUT.SisypheLut method) getMajorBlob() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getMarker() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) getMarkersCount() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) getMask() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getMask2() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getMaskROI() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getMaskROI2() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getMatrixColumn() (Sisyphe.core.sisypheTransform.SisypheTransform method) getMatrixDiagonal() (Sisyphe.core.sisypheTransform.SisypheTransform method) getMax() (Sisyphe.core.sisypheImage.SisypheImage method) getMaximumCount() (Sisyphe.core.sisypheRecent.SisypheRecent method) getMaxVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getMD() (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getMean() (Sisyphe.core.sisypheImage.SisypheImage method) getMeanObservations() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getMeanVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getMedian() (Sisyphe.core.sisypheImage.SisypheImage method) getMedianVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getMemorySize() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) getMeshSurface() (Sisyphe.core.sisypheMesh.SisypheMesh method) getMeshVolume() (Sisyphe.core.sisypheMesh.SisypheMesh method) getMetallic() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getMidACPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getMin() (Sisyphe.core.sisypheImage.SisypheImage method) getMincExt() (in module Sisyphe.core.sisypheConstants) getMinLength() (Sisyphe.core.sisypheTracts.SisypheTracking method) getMinSeparationAngleOfPeaks() (Sisyphe.core.sisypheTracts.SisypheTracking method) getMinVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getModality() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheXml.XmlVolume method) getModalityToCodeDict() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getModel() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDSIDModel method) (Sisyphe.core.sisypheTracts.SisypheDSIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSAModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel method) getMorphoClosing() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getMorphoDilate() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getMorphoErode() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getMorphologyRadius() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getMorphoOpening() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getMoving() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getMovingMesh() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getMovingROI() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getMovingStreamlines() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getMRModalityTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getMRSequences() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getMRSOPClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getNACPath() (in module Sisyphe.core.sisypheConstants) getName() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTools.NamedWidget method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) getNative2DOrientation() (Sisyphe.core.sisypheImage.SisypheImage method) getNative2DOrientationAsString() (Sisyphe.core.sisypheImage.SisypheImage method) getNeighbouringGrayToneDifferenceMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) getNiftiCompressedExt() (in module Sisyphe.core.sisypheConstants) getNiftiExt() (in module Sisyphe.core.sisypheConstants) getNMModalityTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getNMSequences() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getNMSOPClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getNonZeroMask() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getNormalizationAsString() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getNrrdExt() (in module Sisyphe.core.sisypheConstants) getNumberOfComponentsPerPixel() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheXml.XmlVolume method) getNumberOfDimensions() (Sisyphe.core.sisypheImage.SisypheImage method) getNumberOfNonZero() (Sisyphe.core.sisypheImage.SisypheImage method) getNumberOfPeaks() (Sisyphe.core.sisypheTracts.SisypheTracking method) getNumberOfPoints() (Sisyphe.core.sisypheMesh.SisypheMesh method) getNumberOfVoxels() (Sisyphe.core.sisypheImage.SisypheImage method) getNumberOfVoxelsInXYPlane() (Sisyphe.core.sisypheImage.SisypheImage method) getNumberOfVoxelsInXZPlane() (Sisyphe.core.sisypheImage.SisypheImage method) getNumberOfVoxelsInYZPlane() (Sisyphe.core.sisypheImage.SisypheImage method) getNumerOfDatasets() (Sisyphe.core.sisypheDicom.XmlDicom method) getNumpy() (Sisyphe.core.sisypheImage.SisypheImage method) getNumpyArray() (Sisyphe.core.sisypheTransform.SisypheTransform method) getNumpyExt() (in module Sisyphe.core.sisypheConstants) getObsCount() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getObservations() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getObservationsDict() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getOffsets() (Sisyphe.core.sisypheTransform.SisypheTransform method) getOpacity() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getOrder() (Sisyphe.core.sisypheTracts.SisypheSHCSAModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel method) getOrientation() (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheXml.XmlVolume method) getOrientationAsString() (Sisyphe.core.sisypheVolume.SisypheVolume method) getOrigin() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheXml.XmlVolume method) getOrigin_ICBM152() (in module Sisyphe.core.sisypheConstants) getOTModalityTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getOTSequences() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getOTSOPClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getParent() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheTransform.SisypheTransform method) getPatientCount() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) getPatientList() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) getPatientMeshes() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) getPatientROIs() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) getPatientTools() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) getPatientVolumes() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) getPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getPercentile() (Sisyphe.core.sisypheImage.SisypheImage method) getPercentileVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getPJModalityTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getPJSequences() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getPoint() (Sisyphe.core.sisypheMesh.SisypheMesh method) getPointFromRelativeDistanceToAC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getPointFromRelativeDistanceToMidACPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getPointFromRelativeDistanceToPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getPointFromRelativeDistanceToReferencePoint() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getPoints() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTracts.SisypheTract method) getPointSize() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.LineWidget method) getPolyData() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTracts.SisypheTract method) getPolyDataMapper() (Sisyphe.core.sisypheMesh.SisypheMesh method) getPooledVariance() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getPosition() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.TextWidget method) getPosition1() (Sisyphe.core.sisypheTools.LineWidget method) getPosition2() (Sisyphe.core.sisypheTools.LineWidget method) getPrefix() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getPrincipalAxis() (Sisyphe.core.sisypheMesh.SisypheMesh method) getProjection() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getProportionalResize() (Sisyphe.core.sisypheTools.BoxWidget method) getPruning() (Sisyphe.core.sisypheROI.SisypheROI method) getPTModalityTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getPTSequences() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getPTSOPClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getQColor() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) getRadialDiffusivity() (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getRange() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheXml.XmlVolume method) getRangeMax() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheXml.XmlVolume method) getRangeMin() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheXml.XmlVolume method) getRawName() (Sisyphe.core.sisypheXml.XmlVolume method) getReferenceID() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) getReferenceIDfromFile() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) getReferenceUID() (Sisyphe.core.sisypheDicom.ImportFromDicom method) getReferenceVolume() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) (Sisyphe.core.sisypheDicom.ImportFromDicom method) getRegExp() (Sisyphe.core.sisypheROI.SisypheROI class method) getRegularDirections() (in module Sisyphe.core.sisypheConstants) getRelativeDistanceFromAC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getRelativeDistanceFromMidACPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getRelativeDistanceFromPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getRelativeDistanceFromReferencePoint() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) getRelativeThresholdOfPeaks() (Sisyphe.core.sisypheTracts.SisypheTracking method) getRemoveBlobByDistance() (Sisyphe.core.sisypheROI.SisypheROI method) getRenderer() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getRenderingAlgorithm() (Sisyphe.core.sisypheMesh.SisypheMesh method) getRenderingAlgorithmAsString() (Sisyphe.core.sisypheMesh.SisypheMesh method) getRenderLineAsTube() (Sisyphe.core.sisypheTools.LineWidget method) getRenderLinesAsTubes() (Sisyphe.core.sisypheMesh.SisypheMesh method) getRenderPointsAsSpheres() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.LineWidget method) getResampleTransform() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getReversedLut() (Sisyphe.core.sisypheLUT.SisypheLut method) getROI() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getROICollection() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) getRootUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getRotation() (Sisyphe.core.sisypheMesh.SisypheMesh method) getRotations() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheTransform.SisypheTransform method) getRotationsFromMatrix() (Sisyphe.core.sisypheTransform.SisypheTransform method) getRoughness() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getRTDoseFilename() (Sisyphe.core.sisypheDicom.ImportFromRTDose method) getRTDoseSOPClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getRTDoseVolume() (Sisyphe.core.sisypheDicom.ImportFromRTDose method) getRTImageSOPClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getRTStructFilename() (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) getRTStructLabel() (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) getRTStructROI() (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) getRTStructSOPClassUID() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getSaveTag() (Sisyphe.core.sisypheDicom.ImportFromDicom method) getScalarColorVisibility() (Sisyphe.core.sisypheMesh.SisypheMesh method) getScalarNames() (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getScale() (Sisyphe.core.sisypheMesh.SisypheMesh method) getSecondVectorDirection() (Sisyphe.core.sisypheImage.SisypheImage method) getSectionFieldsList() (Sisyphe.core.sisypheSettings.SisypheSettings method) getSectionNode() (Sisyphe.core.sisypheSettings.SisypheSettings method) getSectionsList() (Sisyphe.core.sisypheSettings.SisypheSettings method) getSeedCountPerVoxel() (Sisyphe.core.sisypheTracts.SisypheTracking method) getSeeds() (Sisyphe.core.sisypheTracts.SisypheTracking method) getSelectedColor() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) getSequence() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheXml.XmlVolume method) getSeriesTime() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getSeriesUID() (Sisyphe.core.sisypheDicom.ImportFromDicom method) getSettingsDirectory() (Sisyphe.core.sisypheDicom.ExportToDicom class method) (Sisyphe.core.sisypheDicom.ExportToRTStruct class method) getShading() (Sisyphe.core.sisypheMesh.SisypheMesh method) getShape() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) getShape_ICBM152() (in module Sisyphe.core.sisypheConstants) getShapeStatistics() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getShapeTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) getSheet() (Sisyphe.core.sisypheDicom.XmlDicom method) getShift() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getShortestStreamlineIndex() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getSignalCovariable() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getSignalCovariableAsString() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getSignalNormalization() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getSisypheDirections() (in module Sisyphe.core.sisypheConstants) getSisypheExt() (in module Sisyphe.core.sisypheConstants) getSisypheROIExt() (in module Sisyphe.core.sisypheConstants) getSisypheStreamlinesFromBundle() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getSisypheStreamlinesLongerThan() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getSisypheStreamlinesShorterThan() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getSisypheVolume() (Sisyphe.core.sisypheROI.SisypheROI method) getSITKDisplacementFieldSITKImage() (Sisyphe.core.sisypheTransform.SisypheTransform method) getSITKDisplacementFieldTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) getSITKImage() (Sisyphe.core.sisypheImage.SisypheImage method) getSITKResampleTransform() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getSITKtoNumpy() (Sisyphe.core.sisypheTransform.SisypheTransform class method) getSITKTransform() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) (Sisyphe.core.sisypheTransform.SisypheTransform method) getSize() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) (Sisyphe.core.sisypheXml.XmlVolume method) getSkeletonize() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) getSkewness() (Sisyphe.core.sisypheImage.SisypheImage method) getSliceIntensityStatistics() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getSliceMarkers() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) getSliceNumbers() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) getSlope() (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheXml.XmlVolume method) getSOPClassUIDFromModality() (Sisyphe.core.sisypheDicom.DicomUIDGenerator class method) getSpacing() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheXml.XmlROI method) (Sisyphe.core.sisypheXml.XmlStreamlines method) (Sisyphe.core.sisypheXml.XmlVolume method) getSpecular() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getSpecularPower() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getSphereProperties() (Sisyphe.core.sisypheTools.HandleWidget method) getSphereRadius() (Sisyphe.core.sisypheTools.HandleWidget method) getSphereVisibility() (Sisyphe.core.sisypheTools.HandleWidget method) getSPLPath() (in module Sisyphe.core.sisypheConstants) getSRI24Path() (in module Sisyphe.core.sisypheConstants) getSRI24TemplateTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getStandardizeIntensity() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getStatistics() (Sisyphe.core.sisypheImage.SisypheImage method) getStd() (Sisyphe.core.sisypheImage.SisypheImage method) getStdVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getStepSize() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) (Sisyphe.core.sisypheTracts.SisypheTracking method) getStreamlineIndexesSortedByLength() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getStreamlines() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getStreamlinesFromBundle() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) getStructElement() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getStudyDate() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getStudyTime() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) getSubjectCount() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getSubjectName() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getSubjectNames() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getSuffix() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getSupportedITKDatatypes() (in module Sisyphe.core.sisypheConstants) getSupportedITKStdDatatypes() (in module Sisyphe.core.sisypheConstants) getTemplatePath() (in module Sisyphe.core.sisypheConstants) getTemplatesID() (in module Sisyphe.core.sisypheConstants) getTemplatesList() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getTensor() (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getText() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.TextWidget method) getTextOffset() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getTextProperty() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) getTextVisibility() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) getThickness() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getThirdVectorDirection() (Sisyphe.core.sisypheImage.SisypheImage method) getThresholdMax() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getThresholdMin() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getThresholds() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getTolerance() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) getTotalFileObsCount() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getTotalObsCount() (Sisyphe.core.sisypheStatistics.SisypheDesign method) getTPModalityTag() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getTPSequences() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getTrace() (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) getTrackingAlgorithm() (Sisyphe.core.sisypheTracts.SisypheTracking method) getTrackingAlgorithmAsString() (Sisyphe.core.sisypheTracts.SisypheTracking method) getTractsExt() (in module Sisyphe.core.sisypheConstants) getTrajectoryAngles() (Sisyphe.core.sisypheTools.LineWidget method) getTransform() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) getTransformFromID() (Sisyphe.core.sisypheVolume.SisypheVolume method) getTransformFromIndex() (Sisyphe.core.sisypheVolume.SisypheVolume method) getTransforms() (Sisyphe.core.sisypheVolume.SisypheVolume method) getTranslations() (Sisyphe.core.sisypheTransform.SisypheTransform method) getTruncateIntensity() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) getTubeProperties() (Sisyphe.core.sisypheTools.LineWidget method) getTubeRadius() (Sisyphe.core.sisypheTools.LineWidget method) getTubeVisibility() (Sisyphe.core.sisypheTools.LineWidget method) getType() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) getUndo() (Sisyphe.core.sisypheROI.SisypheROIDraw method) getUnit() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheXml.XmlVolume method) getUnitList() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition class method) getUserDirectory() (Sisyphe.core.sisypheRecent.SisypheRecent class method) getUsername() (in module Sisyphe.core.sisypheSettings) getUserPath() (in module Sisyphe.core.sisypheSettings) getUserPySisyphePath() (in module Sisyphe.core.sisypheSettings) getUserSettings() (Sisyphe.core.sisypheSettings.SisypheDialogsSettings class method) (Sisyphe.core.sisypheSettings.SisypheFunctionsSettings class method) (Sisyphe.core.sisypheSettings.SisypheSettings class method) (Sisyphe.core.sisypheSettings.SisypheTooltips class method) getValueFromAlpha() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getValueFromColor() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) getValuesAt() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getValuesInsideMask() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getVartypes() (Sisyphe.core.sisypheSettings.SisypheSettings class method) getVector() (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) getVersor() (Sisyphe.core.sisypheTransform.SisypheTransform method) getVertexColor() (Sisyphe.core.sisypheMesh.SisypheMesh method) getVertexQColor() (Sisyphe.core.sisypheMesh.SisypheMesh method) getVertexVisibility() (Sisyphe.core.sisypheMesh.SisypheMesh method) getVisibility() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) getVolume() (Sisyphe.core.sisypheDicom.ExportToDicom method) (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) getVolumeAttribute() (Sisyphe.core.sisypheVolume.SisypheVolume class method) getVolumeAttributes() (Sisyphe.core.sisypheVolume.SisypheVolume class method) getVoxelCoordinatesFromWorldCoordinates() (Sisyphe.core.sisypheImage.SisypheImage method) getVoxelVolume() (Sisyphe.core.sisypheImage.SisypheImage method) getVtkContourActor() (Sisyphe.core.sisypheROI.SisypheROI method) getVtkContourPolyData() (Sisyphe.core.sisypheROI.SisypheROI method) getVTKDirections() (in module Sisyphe.core.sisypheConstants) getVtkExt() (in module Sisyphe.core.sisypheConstants) getVTKImage() (Sisyphe.core.sisypheImage.SisypheImage method) getvtkLookupTable() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheROI.SisypheROI method) getVTKLUT() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) getVtkMarchingCubeContourActor() (Sisyphe.core.sisypheROI.SisypheROI method) getVtkMarchingCubeContourPolyData() (Sisyphe.core.sisypheROI.SisypheROI method) getVTKMatrix3x3() (Sisyphe.core.sisypheTransform.SisypheTransform method) getVTKMatrix4x4() (Sisyphe.core.sisypheTransform.SisypheTransform method) getVtkProperty() (Sisyphe.core.sisypheMesh.SisypheMesh method) getVTKtoNumpy() (Sisyphe.core.sisypheTransform.SisypheTransform class method) getVTKTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) getWidth() (Sisyphe.core.sisypheImage.SisypheImage method) getWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheXml.XmlVolume method) getWindowMax() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheXml.XmlVolume method) getWindowMin() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheXml.XmlVolume method) getWindowRange() (Sisyphe.core.sisypheLUT.SisypheLut method) getWorldCoordinatesFromVoxelCoordinates() (Sisyphe.core.sisypheImage.SisypheImage method) getWorldfromICBM() (Sisyphe.core.sisypheVolume.SisypheVolume method) getWorldfromLEKSELL() (Sisyphe.core.sisypheVolume.SisypheVolume method) getWorldfromTransform() (Sisyphe.core.sisypheVolume.SisypheVolume method) getXmlDicom() (Sisyphe.core.sisypheVolume.SisypheVolume method) getXmlDicomFilename() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) getXmlDicomReference() (Sisyphe.core.sisypheDicom.ExportToDicom method) getXmlVolume() (Sisyphe.core.sisypheVolume.SisypheVolume class method)

H

HandleWidget (class in Sisyphe.core.sisypheTools) hasAC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) hasACPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) hasAffineTransform() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) hasAllFileObs() (Sisyphe.core.sisypheStatistics.SisypheDesign method) hasAlphaElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) hasAlphaTransferValue() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) hasCenter() (Sisyphe.core.sisypheTransform.SisypheTransform method) hasColorElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) hasColorTransferValue() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) hasCondition() (Sisyphe.core.sisypheStatistics.SisypheDesign method) hasContrast() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) hasDatabasePath() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) hasDesignMatrix() (Sisyphe.core.sisypheStatistics.SisypheDesign method) hasDicomSeriesFilenames() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) hasDisplacementFieldTransform() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) hasDWI() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) hasErrors() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) hasExportFolder() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) hasField() (Sisyphe.core.sisypheSettings.SisypheSettings method) (Sisyphe.core.sisypheXml.AbstractXml method) hasFilename() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) (Sisyphe.core.sisypheVolume.SisypheVolume method) hasFixedVolumeAttributes() (Sisyphe.core.sisypheTransform.SisypheTransform method) hasGlobalFactor() (Sisyphe.core.sisypheStatistics.SisypheDesign method) hasGradientElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) hasGradients() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) hasGradientTransferValue() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) hasGroup() (Sisyphe.core.sisypheStatistics.SisypheDesign method) hasICBM152ReferenceID() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) hasICBMTransform() (Sisyphe.core.sisypheVolume.SisypheVolume method) hasID() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheTransform.SisypheTransform method) hasImportFolder() (Sisyphe.core.sisypheDicom.ImportFromDicom method) hasInteractor() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) hasITKImage() (Sisyphe.core.sisypheImage.SisypheImage method) hasKeyword() (Sisyphe.core.sisypheDicom.XmlDicom method) hasLabels() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) hasLEKSELLTransform() (Sisyphe.core.sisypheVolume.SisypheVolume method) hasModel() (Sisyphe.core.sisypheStatistics.SisypheDesign method) hasMoving() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) hasMovingMesh() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) hasMovingROI() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) hasMovingStreamlines() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) hasName() (Sisyphe.core.sisypheTools.NamedWidget method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTransform.SisypheTransform method) hasNegativeValues() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) hasParent() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheTransform.SisypheTransform method)

hasPatient() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) hasPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) hasReferenceID() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) hasReferenceUID() (Sisyphe.core.sisypheDicom.ImportFromDicom method) hasReferenceVolume() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) (Sisyphe.core.sisypheDicom.ImportFromDicom method) hasRegularStep() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) hasRenderer() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) hasROI() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) hasROICollection() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) hasRTDoseFilename() (Sisyphe.core.sisypheDicom.ImportFromRTDose method) hasRTDoseVolume() (Sisyphe.core.sisypheDicom.ImportFromRTDose method) hasRTStructFilename() (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) hasRTStructROI() (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) hasSameFieldOfView() (Sisyphe.core.sisypheImage.SisypheImage method) hasSameFixedVolumeAttributes() (Sisyphe.core.sisypheTransform.SisypheTransform method) hasSameID() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheVolume.SisypheVolume method) hasSameOrigin() (Sisyphe.core.sisypheImage.SisypheImage method) hasSameSize() (Sisyphe.core.sisypheImage.SisypheImage method) hasSameSpacing() (Sisyphe.core.sisypheImage.SisypheImage method) hasScalarNames() (Sisyphe.core.sisypheTracts.SisypheTract method) hasScalars() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) hasSection() (Sisyphe.core.sisypheSettings.SisypheSettings method) hasSisypheMesh() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) hasSisypheROI() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) hasSisypheVolume() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) hasSize() (Sisyphe.core.sisypheTransform.SisypheTransform method) hasSlice() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) hasSpacing() (Sisyphe.core.sisypheTransform.SisypheTransform method) hasSRI24ReferenceID() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) hasSubject() (Sisyphe.core.sisypheStatistics.SisypheDesign method) hasThresholds() (Sisyphe.core.sisypheROI.SisypheROIDraw method) hasTransform() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) (Sisyphe.core.sisypheVolume.SisypheVolume method) hasUnit() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) hasVolume() (Sisyphe.core.sisypheDicom.ExportToDicom method) (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) hasXML() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) hasXmlDicom() (Sisyphe.core.sisypheVolume.SisypheVolume method) hasXmlDicomReference() (Sisyphe.core.sisypheDicom.ExportToDicom method) hasZeroOneRange() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method)

I

identity (Sisyphe.core.sisypheVolume.SisypheVolume property) ImportFromDicom (class in Sisyphe.core.sisypheDicom) ImportFromRTDose (class in Sisyphe.core.sisypheDicom) ImportFromRTStruct (class in Sisyphe.core.sisypheDicom) index() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) init() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) initPySisypheUserPath() (in module Sisyphe.core.sisypheSettings) insert() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) installFromHost() (in module Sisyphe.core.sisypheDownload) interpolateBetweenSlices() (Sisyphe.core.sisypheROI.SisypheROIDraw method) interpolateEmptySlices() (Sisyphe.core.sisypheROI.SisypheROIDraw method) intersection() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) is2D() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) is3D() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isAffine() (Sisyphe.core.sisypheTransform.SisypheTransform method) isAlphaTransferEmpty() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) isAnisotropic() (Sisyphe.core.sisypheImage.SisypheImage method) isAnonymized() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) isAtlas() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheXml.XmlStreamlines method) isAtlasBundleName() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) isAtlasBundleShortName() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) isAtlasRegistered() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) isATROPOS() (in module Sisyphe.core.sisypheConstants) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isAxial() (Sisyphe.core.sisypheVolume.SisypheVolume method) isBrainstemMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isCenteredFromParent() (Sisyphe.core.sisypheTransform.SisypheTransform method) isCenteredToSisypheVolume() (Sisyphe.core.sisypheTransform.SisypheTransform method) isCentroid() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheXml.XmlStreamlines method) isCerebellumMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isCerebroSpinalFluidMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isCMAP() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isColorRepresentation() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) isColorTransferEmpty() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) isContrastEnhanced() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isCoronal() (Sisyphe.core.sisypheVolume.SisypheVolume method) isCT() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isCustom() (Sisyphe.core.sisypheSettings.SisypheSettings method) isCustomLut() (Sisyphe.core.sisypheLUT.SisypheLut method) isCustomSequence() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isCustomUnit() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isDefaultBackupDicomDirectory() (Sisyphe.core.sisypheDicom.ExportToDicom method) isDefaultBackupXmlDicomDirectory() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) isDefaultLut() (Sisyphe.core.sisypheLUT.SisypheLut method) isDefaultName() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) isDefaultOrigin() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) isDefaultPosition() (Sisyphe.core.sisypheMesh.SisypheMesh method) isDefaultRotation() (Sisyphe.core.sisypheMesh.SisypheMesh method) isDefaultWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) isDicom() (in module Sisyphe.core.sisypheImageIO) isDisplacementField() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheTransform.SisypheTransform method) isDISTAL() (in module Sisyphe.core.sisypheConstants) isDynamic() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) isEmpty() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) (Sisyphe.core.sisypheDicom.ImportFromDicom method) (Sisyphe.core.sisypheDicom.XmlDicom method) (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheSettings.SisypheSettings method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) isEmptyArray() (Sisyphe.core.sisypheImage.SisypheImage method)

isEqual() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) isEstimated() (Sisyphe.core.sisypheStatistics.SisypheDesign method) isFemale() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) isFileLut() (Sisyphe.core.sisypheLUT.SisypheLut method) isFitted() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) isFloat32Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isFloat64Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isFloatDatatype() (Sisyphe.core.sisypheImage.SisypheImage method) isfMRIDesign() (Sisyphe.core.sisypheStatistics.SisypheDesign method) isGradientTransferEmpty() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) isGreyMatterMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isHomogeneous() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) isICBM152() (in module Sisyphe.core.sisypheConstants) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isICBM452() (in module Sisyphe.core.sisypheConstants) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isIdentity() (Sisyphe.core.sisypheTransform.SisypheTransform method) isIdentityTransform() (Sisyphe.core.sisypheVolume.SisypheVolume method) isInt16Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isInt32Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isInt64Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isInt8Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isIntegerDatatype() (Sisyphe.core.sisypheImage.SisypheImage method) isInternalLut() (Sisyphe.core.sisypheLUT.SisypheLut method) isIsotropic() (Sisyphe.core.sisypheImage.SisypheImage method) isITKImageSupportedType() (in module Sisyphe.core.sisypheConstants) isITKSupportedStdType() (in module Sisyphe.core.sisypheConstants) isITKSupportedType() (in module Sisyphe.core.sisypheConstants) isLB() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isMale() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) isMR() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isMulticomponent() (Sisyphe.core.sisypheImage.SisypheImage method) isNAC() (in module Sisyphe.core.sisypheConstants) isNM() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isNotEqual() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) isOlder() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) isOT() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isPJ() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isPointInside() (Sisyphe.core.sisypheMesh.SisypheMesh method) isPointOutside() (Sisyphe.core.sisypheMesh.SisypheMesh method) isPT() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isRankDeficient() (in module Sisyphe.core.sisypheStatistics) isRegularStep() (Sisyphe.core.sisypheXml.XmlStreamlines method) isRGBRepresentation() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) isRigid() (Sisyphe.core.sisypheTransform.SisypheTransform method) isSagittal() (Sisyphe.core.sisypheVolume.SisypheVolume method) isSameAlphaTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) isSameColor() (Sisyphe.core.sisypheLUT.SisypheLut method) isSameColorTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) isSameGradientTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) isScalarsRepresentation() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) isSliceDisplay() (Sisyphe.core.sisypheTools.NamedWidget method) isSPL() (in module Sisyphe.core.sisypheConstants) isSRI24() (in module Sisyphe.core.sisypheConstants) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isStandardSequence() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isStandardUnit() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isStatic() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) isStatisticalMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isStreamlineIntersectSphere() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) isSubCorticalGreyMatterMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isTemplate() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isTemplateID() (in module Sisyphe.core.sisypheConstants) isThickAnisotropic() (Sisyphe.core.sisypheImage.SisypheImage method) isTMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isTP() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isUInt16Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isUInt32Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isUInt64Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isUInt8Datatype() (Sisyphe.core.sisypheImage.SisypheImage method) isUint8ITKImage() (in module Sisyphe.core.sisypheConstants) isUser() (Sisyphe.core.sisypheSettings.SisypheSettings method) isValidAttribute() (Sisyphe.core.sisypheSettings.SisypheSettings class method) isValidDatatype() (in module Sisyphe.core.sisypheConstants) isValidLibraryName() (in module Sisyphe.core.sisypheConstants) isValidVartype() (Sisyphe.core.sisypheSettings.SisypheSettings class method) isVolumeDisplay() (Sisyphe.core.sisypheTools.NamedWidget method) isWhiteMatterMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) isWhole() (Sisyphe.core.sisypheXml.XmlStreamlines method) isWholeBrainTractogram() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) isYounger() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) isZMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method)

K

keys() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method)

L

labelSTAPLECombination() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) labelToROI() (Sisyphe.core.sisypheVolume.SisypheVolume method) labelVotingCombination() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) laplacianSmooth() (Sisyphe.core.sisypheMesh.SisypheMesh method) LineWidget (class in Sisyphe.core.sisypheTools) listToStr() (in module Sisyphe.core.sisypheConstants) load() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheRecent.SisypheRecent method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheSheet.SisypheSheet class method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) loadAtlasBundle() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) loadBVal() (in module Sisyphe.core.sisypheDicom) loadBVec() (in module Sisyphe.core.sisypheDicom) loadCSV() (Sisyphe.core.sisypheSheet.SisypheSheet class method) loadCustomFileSettings() (Sisyphe.core.sisypheSettings.SisypheSettings method) loadDefaultFileSettings() (Sisyphe.core.sisypheSettings.SisypheSettings method) loadDWI() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) loadFromANTSTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) loadFromBrainVoyagerTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) loadFromBrainVoyagerVMR() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) loadFromBrainVoyagerVOI() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) loadFromDpy() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) loadFromFib() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) loadFromFreeSurferMGH() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) loadFromMatfileTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) loadFromMINC() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) loadFromNIFTI() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) loadFromNRRD() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method)

loadFromNumpy() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheVolume.SisypheVolume method) loadFromOBJ() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) loadFromOlt() (Sisyphe.core.sisypheLUT.SisypheLut method) loadFromSisyphe() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) loadFromSTL() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) loadFromTck() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) loadFromTfmTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) loadFromTrk() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) loadFromTxt() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheLUT.SisypheLut method) loadFromTxtTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) loadFromVTK() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) loadFromVtk() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) loadFromVTK() (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) loadFromVtp() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) loadFromXfmTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) loadFromXML() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) loadFromXMLVTK() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) loadGradients() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) loadJSON() (Sisyphe.core.sisypheSheet.SisypheSheet class method) loadLabels() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) loadMask() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) loadModel() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) loadOld() (Sisyphe.core.sisypheROI.SisypheROI method) loadTransforms() (Sisyphe.core.sisypheVolume.SisypheVolume method) loadTXT() (Sisyphe.core.sisypheSheet.SisypheSheet class method) loadUserFileSettings() (Sisyphe.core.sisypheSettings.SisypheSettings method) loadXLSX() (Sisyphe.core.sisypheSheet.SisypheSheet class method) loadXmlDicom() (Sisyphe.core.sisypheVolume.SisypheVolume method) loadXmlDicomFilename() (Sisyphe.core.sisypheDicom.XmlDicom method) lutConversion() (in module Sisyphe.core.sisypheLUT)

M

majorBlobSelect() (Sisyphe.core.sisypheROI.SisypheROIDraw method) majorBlobSelectSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) markersSearch() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) maskSegment() (Sisyphe.core.sisypheROI.SisypheROIDraw method) maskSegment2() (Sisyphe.core.sisypheROI.SisypheROIDraw method) meshSurfaceProjection() (Sisyphe.core.sisypheTools.HandleWidget method) minimumClosestDistanceBetweenStreamlines() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) modelEstimate() (in module Sisyphe.core.sisypheStatistics) module Sisyphe.core.sisypheConstants Sisyphe.core.sisypheDatabase Sisyphe.core.sisypheDicom Sisyphe.core.sisypheDownload Sisyphe.core.sisypheFiducialBox Sisyphe.core.sisypheImage Sisyphe.core.sisypheImageAttributes Sisyphe.core.sisypheImageIO Sisyphe.core.sisypheLUT Sisyphe.core.sisypheMesh Sisyphe.core.sisypheMeshIO Sisyphe.core.sisypheRecent Sisyphe.core.sisypheROI Sisyphe.core.sisypheSettings Sisyphe.core.sisypheSheet Sisyphe.core.sisypheStatistics Sisyphe.core.sisypheTools Sisyphe.core.sisypheTracts Sisyphe.core.sisypheTransform Sisyphe.core.sisypheVolume Sisyphe.core.sisypheXml

morphoBlobClosing() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoBlobDilate() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoBlobErode() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoBlobOpening() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoClosing() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoDilate() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoErode() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoOpening() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoSliceBlobClosing() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoSliceBlobDilate() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoSliceBlobErode() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoSliceBlobOpening() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoSliceClosing() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoSliceDilate() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoSliceErode() (Sisyphe.core.sisypheROI.SisypheROIDraw method) morphoSliceOpening() (Sisyphe.core.sisypheROI.SisypheROIDraw method) mosaicImageToVolume() (in module Sisyphe.core.sisypheDicom) multiComponentSisypheVolumeFromList() (in module Sisyphe.core.sisypheVolume)

N

NamedWidget (class in Sisyphe.core.sisypheTools) newAngleWidget() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) newBoxWidget() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) newDistanceWidget() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) newField() (Sisyphe.core.sisypheSettings.SisypheSettings method) newHandleWidget() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) newInstance() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) newLineWidget() (Sisyphe.core.sisypheTools.ToolWidgetCollection method)

newOrthogonalDistanceWidget() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) newSection() (Sisyphe.core.sisypheSettings.SisypheSettings method) newSeries() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) newStudy() (Sisyphe.core.sisypheDicom.DicomUIDGenerator method) newTextWidget() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) noiseEstimate() (Sisyphe.core.sisypheImage.SisypheImage method) notMaskSegment2() (Sisyphe.core.sisypheROI.SisypheROIDraw method) numpyToVtkImageData() (in module Sisyphe.core.sisypheImage)

O

objectSegment() (Sisyphe.core.sisypheROI.SisypheROIDraw method) objectSegmentSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) openColorTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer class method) openLut() (Sisyphe.core.sisypheLUT.SisypheLut class method) openMesh() (Sisyphe.core.sisypheMesh.SisypheMesh class method) openModel() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel class method) (Sisyphe.core.sisypheTracts.SisypheDKIModel class method) (Sisyphe.core.sisypheTracts.SisypheDSIDModel class method) (Sisyphe.core.sisypheTracts.SisypheDSIModel class method) (Sisyphe.core.sisypheTracts.SisypheDTIModel class method) (Sisyphe.core.sisypheTracts.SisypheSHCSAModel class method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel class method)

openROI() (Sisyphe.core.sisypheROI.SisypheROI class method) openStreamlines() (Sisyphe.core.sisypheTracts.SisypheStreamlines class method) openTransform() (Sisyphe.core.sisypheTransform.SisypheTransform class method) openTransforms() (Sisyphe.core.sisypheTransform.SisypheTransforms class method) openVolume() (Sisyphe.core.sisypheVolume.SisypheVolume class method) OrthogonalDistanceWidget (class in Sisyphe.core.sisypheTools)

P

parseXML() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) ParseXML() (Sisyphe.core.sisypheMesh.SisypheMesh method) parseXML() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheSheet.SisypheSheet class method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDSIDModel method) (Sisyphe.core.sisypheTracts.SisypheDSIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSAModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) (Sisyphe.core.sisypheVolume.SisypheVolume method) parseXMLNode() (Sisyphe.core.sisypheSheet.SisypheSheet class method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTransform.SisypheTransform method)

parseXMLOld() (Sisyphe.core.sisypheROI.SisypheROI method) pasteBlob() (Sisyphe.core.sisypheROI.SisypheROIDraw method) pasteBlobSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) pasteSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) pCorrectedBonferroni() (in module Sisyphe.core.sisypheStatistics) planeProjection() (Sisyphe.core.sisypheTools.HandleWidget method) pop() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) popRedoLIFO() (Sisyphe.core.sisypheROI.SisypheROIDraw method) popUndoLIFO() (Sisyphe.core.sisypheROI.SisypheROIDraw method) postMultiply() (Sisyphe.core.sisypheTransform.SisypheTransform method) preMultiply() (Sisyphe.core.sisypheTransform.SisypheTransform method) ProgressTextChanged (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox attribute) pruning() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) pUncorrectedBonferroni() (in module Sisyphe.core.sisypheStatistics) PVAL (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition attribute) pvalueTot() (in module Sisyphe.core.sisypheStatistics) pvalueToz() (in module Sisyphe.core.sisypheStatistics)

Q

qFDRTot() (in module Sisyphe.core.sisypheStatistics)

qFDRToz() (in module Sisyphe.core.sisypheStatistics)

R

readFromBitmap() (in module Sisyphe.core.sisypheImageIO) readFromBrainVoyagerVMR() (in module Sisyphe.core.sisypheImageIO) readFromDicomDirectory() (in module Sisyphe.core.sisypheImageIO) readFromDicomFilenames() (in module Sisyphe.core.sisypheImageIO) readFromDicomSeries() (in module Sisyphe.core.sisypheImageIO) readFromFreeSurferMGH() (in module Sisyphe.core.sisypheImageIO) readFromMINC() (in module Sisyphe.core.sisypheImageIO) readFromNIFTI() (in module Sisyphe.core.sisypheImageIO) readFromNRRD() (in module Sisyphe.core.sisypheImageIO) readFromNumpy() (in module Sisyphe.core.sisypheImageIO) readFromSisyphe() (in module Sisyphe.core.sisypheImageIO) readFromSisypheROI() (in module Sisyphe.core.sisypheImageIO) readFromVTK() (in module Sisyphe.core.sisypheImageIO) readImage() (in module Sisyphe.core.sisypheImageIO) readMeshFromOBJ() (in module Sisyphe.core.sisypheMeshIO) readMeshFromSTL() (in module Sisyphe.core.sisypheMeshIO) readMeshFromVTK() (in module Sisyphe.core.sisypheMeshIO) readMeshFromXMLVTK() (in module Sisyphe.core.sisypheMeshIO) regionGrowing() (Sisyphe.core.sisypheROI.SisypheROIDraw method) regionGrowingBlob() (Sisyphe.core.sisypheROI.SisypheROIDraw method) regionGrowingBlobSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) regionGrowingConfidence() (Sisyphe.core.sisypheROI.SisypheROIDraw method) regionGrowingConfidenceBlob() (Sisyphe.core.sisypheROI.SisypheROIDraw method) regionGrowingConfidenceBlobSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) regionGrowingConfidenceSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) regionGrowingSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) remove() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) removeAllBundles() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) removeAllPrefixes() (Sisyphe.core.sisypheVolume.SisypheVolume method) removeAllPrefixesFromFilename() (in module Sisyphe.core.sisypheConstants) removeAllSuffixes() (Sisyphe.core.sisypheVolume.SisypheVolume method) removeAllSuffixesFromFilename() (in module Sisyphe.core.sisypheConstants) removeAlphaTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) removeBlobByDistance() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) removeBundle() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) removeCenter() (Sisyphe.core.sisypheTransform.SisypheTransform method)

removeColorTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) removeDisplacementField() (Sisyphe.core.sisypheTransform.SisypheTransform method) removeDisplay() (Sisyphe.core.sisypheVolume.SisypheVolume method) removeFrontPlateMarkers() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) removeGradientTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) removeNeckSlices() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) removePatient() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) removePatients() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) removeROI() (Sisyphe.core.sisypheROI.SisypheROIDraw method) removeSisypheMesh() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) removeSisypheROI() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) removeSisypheVolume() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) removeSliceMarkers() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) removeSuffixNumber() (Sisyphe.core.sisypheVolume.SisypheVolume method) removeSuffixNumberFromFilename() (in module Sisyphe.core.sisypheConstants) (in module Sisyphe.core.sisypheDicom) removeTracts() (Sisyphe.core.sisypheTracts.SisypheBundle method) rename() (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) renameBundle() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) reorientGradients() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) replaceDirname() (in module Sisyphe.core.sisypheConstants) replaceNanInfValues() (Sisyphe.core.sisypheImage.SisypheImage method) resample() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) resampleAtlasBundle() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) resampleMesh() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) resampleMoving() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) resampleROI() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) resampleStreamlines() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) reselCount() (in module Sisyphe.core.sisypheStatistics) reverse() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) reverseLut() (Sisyphe.core.sisypheLUT.SisypheLut method) roiSTAPLECombination() (Sisyphe.core.sisypheROI.SisypheROICollection method) roiVotingCombination() (Sisyphe.core.sisypheROI.SisypheROICollection method)

S

sameName() (Sisyphe.core.sisypheTracts.SisypheBundle method) save() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheRecent.SisypheRecent method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheSettings.SisypheSettings method) (Sisyphe.core.sisypheSheet.SisypheSheet method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) (Sisyphe.core.sisypheVolume.SisypheVolume method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) saveAs() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheSettings.SisypheSettings method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) (Sisyphe.core.sisypheVolume.SisypheVolume method) saveAsOld() (Sisyphe.core.sisypheROI.SisypheROI method) saveBitmapCapture() (Sisyphe.core.sisypheVolume.SisypheVolume method) saveBitmapPreview() (Sisyphe.core.sisypheLUT.SisypheLut method) saveBVal() (in module Sisyphe.core.sisypheDicom) saveBVec() (in module Sisyphe.core.sisypheDicom) saveColormapBitmapPreview() (in module Sisyphe.core.sisypheLUT) saveCSV() (Sisyphe.core.sisypheSheet.SisypheSheet method) saveDataElementValuesToCSV() (Sisyphe.core.sisypheDicom.XmlDicom method) saveDataElementValuesToExcel() (Sisyphe.core.sisypheDicom.XmlDicom method) saveDataElementValuesToLATEX() (Sisyphe.core.sisypheDicom.XmlDicom method) saveDataElementValuesToMatfile() (Sisyphe.core.sisypheDicom.XmlDicom method) saveDataElementValuesToTxt() (Sisyphe.core.sisypheDicom.XmlDicom method) saveDataElementValuesToXml() (Sisyphe.core.sisypheDicom.XmlDicom method) saveDisplacementField() (Sisyphe.core.sisypheTransform.SisypheTransform method) saveJSON() (Sisyphe.core.sisypheSheet.SisypheSheet method) saveLabels() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) saveLATEX() (Sisyphe.core.sisypheSheet.SisypheSheet method) saveMATFILE() (Sisyphe.core.sisypheSheet.SisypheSheet method) saveModel() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) saveNPY() (Sisyphe.core.sisypheSheet.SisypheSheet method) saveNPZ() (Sisyphe.core.sisypheSheet.SisypheSheet method) saveReferenceVolume() (Sisyphe.core.sisypheDicom.ImportFromDicom method) saveRTDoseVolume() (Sisyphe.core.sisypheDicom.ImportFromRTDose method) saveRTStructLabel() (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) saveRTStructROI() (Sisyphe.core.sisypheDicom.ImportFromRTStruct method) saveSisypheMeshtoDatabase() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) saveSisypheROItoDatabase() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) saveSisypheVolumeToDatabase() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) saveToANTSTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) saveToCSV() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) saveToDefault() (Sisyphe.core.sisypheSettings.SisypheSettings method) saveToDpy() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) saveToFib() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) saveToJSON() (Sisyphe.core.sisypheImage.SisypheImage method) saveToMatfileTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) saveToMINC() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) saveToMulticomponentVolume() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) saveToNIFTI() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) saveToNRRD() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) saveToNumpy() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheVolume.SisypheVolume method) saveToOBJ() (Sisyphe.core.sisypheMesh.SisypheMesh method) saveToSTL() (Sisyphe.core.sisypheMesh.SisypheMesh method) saveToTck() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) saveToTfmTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) saveToTrk() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) saveToTxt() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheLUT.SisypheLut method) saveToTxtTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) saveToVTK() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) saveToVtk() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) saveToVTK() (Sisyphe.core.sisypheVolume.SisypheVolume method) saveToVtp() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) saveToXfmTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) saveToXLSX() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) saveToXML() (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheLUT.SisypheLut method) saveToXMLVTK() (Sisyphe.core.sisypheMesh.SisypheMesh method) saveTransforms() (Sisyphe.core.sisypheVolume.SisypheVolume method) saveTXT() (Sisyphe.core.sisypheSheet.SisypheSheet method) saveXLSX() (Sisyphe.core.sisypheSheet.SisypheSheet method) searchPatients() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) searchSisypheMeshFromID() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) searchSisypheROIFromID() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) searchSisypheVolumeFromID() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) seedFill() (Sisyphe.core.sisypheROI.SisypheROIDraw method) seedFillSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) select() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) set2D() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) set3D() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setAC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) setACPC() (Sisyphe.core.sisypheVolume.SisypheVolume method) setAcquisition() (Sisyphe.core.sisypheVolume.SisypheVolume method) setActiveContourAdvectionWeight() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourAlgorithm() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourConvergence() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourCurvatureWeight() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourFactor() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourNumberOfIterations() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourPropagationWeight() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourSeedRadius() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourSigma() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveContourThresholds() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setActiveScalars() (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setActor() (Sisyphe.core.sisypheMesh.SisypheMesh method) setAffineParameters() (Sisyphe.core.sisypheTransform.SisypheTransform method) setAge() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) setAgeCovariableByCondition() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setAgeCovariableByGroup() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setAgeCovariableBySubject() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setAgeGlobalCovariable() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setAllTagsOn() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) setAlpha() (Sisyphe.core.sisypheROI.SisypheROI method) setAlphaTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setAlphaTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setAmbient() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setAngleVector() (Sisyphe.core.sisypheTransform.SisypheTransform method) setANTSTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) setAtlasStatus() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) setAtlasTransformation() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) setAttributesFromFixedVolume() (Sisyphe.core.sisypheTransform.SisypheTransform method) setAutoCorrelations() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setBackupDicomDirectory() (Sisyphe.core.sisypheDicom.ExportToDicom method) setBackupXmlDicomDirectory() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) setBins() (Sisyphe.core.sisypheROI.SisypheROIHistogram method) setBrushRadius() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setBrushType() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setBundleName() (Sisyphe.core.sisypheTracts.SisypheTracking method) setCenter() (Sisyphe.core.sisypheTransform.SisypheTransform method) setCenterFromParent() (Sisyphe.core.sisypheTransform.SisypheTransform method) setCenterFromSisypheVolume() (Sisyphe.core.sisypheTransform.SisypheTransform method) setCenterWidthWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setCentroidStatus() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) setColor() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) setColorRepresentation() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setColorRepresentationAsString() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setColorRepresentationToColor() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setColorRepresentationToRGB() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setColorRepresentationToScalars() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setColorTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setColorTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setCompression() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setCompressionOff() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setCompressionOn() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setConfidenceConnectedIter() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setConfidenceConnectedSigma() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setContrast() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setCTBoneWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setCTBrainWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setCTMetallicWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setDatabasePath() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) setDatabasePathFromSettings() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) setDateOfBirthday() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) setDateOfScan() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setDefault() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setDefaultAlpha() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setDefaultColor() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setDefaultDatabasePath() (Sisyphe.core.sisypheDatabase.SisypheDatabase method) setDefaultDirections() (Sisyphe.core.sisypheVolume.SisypheVolume method) setDefaultFilename() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) setDefaultGradient() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setDefaultLut() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheLUT.SisypheLut method) setDefaultName() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) setDefaultOrigin() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) setDefaultRepresentation() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) setDefaultWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setDefaultWindowMax() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setDefaultWindowMin() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setDegreesOfFreedom() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setDicomFilenames() (Sisyphe.core.sisypheDicom.ImportFromDicom method) setDicomSeriesFilenames() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) setDictDesign() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setDiffuse() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setDirections() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setDirname() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setDisplay() (Sisyphe.core.sisypheVolume.SisypheVolume method) setDisplayBelowRangeColorOff() (Sisyphe.core.sisypheLUT.SisypheLut method) setDisplayBelowRangeColorOn() (Sisyphe.core.sisypheLUT.SisypheLut method) setDWI() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) setDWIFromNumpy() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) setDWIShape() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) setDWISpacing() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) setDynamic() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setEdgeColor() (Sisyphe.core.sisypheMesh.SisypheMesh method) setEdgeQColor() (Sisyphe.core.sisypheMesh.SisypheMesh method) setEdgeVisibilityOff() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setEdgeVisibilityOn() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setExportFolder() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) setFieldValue() (Sisyphe.core.sisypheSettings.SisypheSettings method) setFilename() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheStatistics.SisypheDesign method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setFilenameFromVolume() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) setFilenamePrefix() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setFilenameSuffix() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setFileObsTo() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setFirstname() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) setFirstOrderTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) setFitAlgorithm() (Sisyphe.core.sisypheTracts.SisypheDKIModel method) (Sisyphe.core.sisypheTracts.SisypheDTIModel method) setFlatRendering() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setFlattenMatrix() (Sisyphe.core.sisypheTransform.SisypheTransform method) setFloatColor() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setfMRIDesign() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setFontBold() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setFontFamily() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) setFontItalic() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setFontSize() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setFrame() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setFrameAsString() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setFrameToLeksell() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setFrameToNo() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setFrameToUnknown() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setFromTransforms() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) setFromVolumes() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) setFullRangeThreshold() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setGender() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) setGenderToFemale() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) setGenderToMale() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) setGenderToUnknown() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) setGouraudRendering() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setGradients() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) setGradientTransfer() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setGradientTransferElement() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) setGrayLevelCooccurrenceMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) setGrayLevelDependenceMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) setGrayLevelRunLengthMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) setGrayLevelSizeZoneMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) setHandleLineWidth() (Sisyphe.core.sisypheTools.LineWidget method) setHandleSize() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) setHuangThreshold() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setID() (Sisyphe.core.sisypheLUT.SisypheColorTransfer method) (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setIdentity() (Sisyphe.core.sisypheTransform.SisypheTransform method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setIDtoATROPOS() (Sisyphe.core.sisypheVolume.SisypheVolume method) setIDtoICBM152() (Sisyphe.core.sisypheVolume.SisypheVolume method) setIDtoICBM452() (Sisyphe.core.sisypheVolume.SisypheVolume method) setIDtoSRI24() (Sisyphe.core.sisypheVolume.SisypheVolume method) setImportFolder() (Sisyphe.core.sisypheDicom.ImportFromDicom method) setIntColor() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setInteractor() (Sisyphe.core.sisypheTools.ToolWidgetCollection method) setIntercept() (Sisyphe.core.sisypheVolume.SisypheVolume method) setInternalLut() (Sisyphe.core.sisypheLUT.SisypheLut method) setInterpolation() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setInterpolator() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) setLabel() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setLabels() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setLastname() (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) setLegend() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setLineWidth() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setList() (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) setLUT() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setLut() (Sisyphe.core.sisypheLUT.SisypheLut method) setLUT() (Sisyphe.core.sisypheMesh.SisypheMesh method) setLut() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setLUTScalarRange() (Sisyphe.core.sisypheMesh.SisypheMesh method) setLutSpring() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToAutumn() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToCool() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToGNU() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToGNU2() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToHeat() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToHot() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToJet() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToRainbow() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToSpectral() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToSummer() (Sisyphe.core.sisypheLUT.SisypheLut method) setLutToWinter() (Sisyphe.core.sisypheLUT.SisypheLut method) setMask() (Sisyphe.core.sisypheTracts.SisypheDiffusionModel method) setMaximumCount() (Sisyphe.core.sisypheRecent.SisypheRecent method) setMeanThreshold() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setMetallic() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setMinLength() (Sisyphe.core.sisypheTracts.SisypheTracking method) setMinSeparationAngleOfPeaks() (Sisyphe.core.sisypheTracts.SisypheTracking method) setModality() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setModalityToCT() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setModalityToLB() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setModalityToMR() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setModalityToNM() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setModalityToOT() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setModalityToPJ() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setModalityToPT() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setModalityToTP() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setMorphologyRadius() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setMoving() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) setMovingMesh() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) setMovingROI() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) setMovingStreamlines() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) setName() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.NamedWidget method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransform method) setNameFromFilename() (Sisyphe.core.sisypheMesh.SisypheMesh method) setNeighbouringGrayToneDifferenceMatrixTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) setNoAgeCovariable() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setNoUnit() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setNumberOfPeaks() (Sisyphe.core.sisypheTracts.SisypheTracking method) setNumpyArray() (Sisyphe.core.sisypheTransform.SisypheTransform method) setOpacity() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method)

setOrder() (Sisyphe.core.sisypheTracts.SisypheSHCSAModel method) (Sisyphe.core.sisypheTracts.SisypheSHCSDModel method) setOrientation() (Sisyphe.core.sisypheVolume.SisypheVolume method) setOrientationToAxial() (Sisyphe.core.sisypheVolume.SisypheVolume method) setOrientationToCoronal() (Sisyphe.core.sisypheVolume.SisypheVolume method) setOrientationToSagittal() (Sisyphe.core.sisypheVolume.SisypheVolume method) setOrigin() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) setOriginFromReferenceVolume() (Sisyphe.core.sisypheMesh.SisypheMesh method) setOriginToCenter() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheMesh.SisypheMesh method) setOtsuThreshold() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setParent() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) (Sisyphe.core.sisypheImageAttributes.SisypheIdentity method) (Sisyphe.core.sisypheTransform.SisypheTransform method) setPathFromVolume() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) setPBRRendering() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setPC() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) setPhongRendering() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setPoint() (Sisyphe.core.sisypheMesh.SisypheMesh method) setPoints() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTracts.SisypheTract method) setPointScalarColorFromVolume() (Sisyphe.core.sisypheMesh.SisypheMesh method) setPointSize() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheTools.LineWidget method) setPolyData() (Sisyphe.core.sisypheMesh.SisypheMesh method) setPosition() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.TextWidget method) setPosition1() (Sisyphe.core.sisypheTools.LineWidget method) setPosition2() (Sisyphe.core.sisypheTools.LineWidget method) setPrefix() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setProportionalResize() (Sisyphe.core.sisypheTools.BoxWidget method) setQColor() (Sisyphe.core.sisypheLUT.SisypheLut method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setRange() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setRangeMax() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setRangeMin() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setReferenceID() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTracts.SisypheStreamlines method) (Sisyphe.core.sisypheTransform.SisypheTransforms method) setReferenceVolume() (Sisyphe.core.sisypheDicom.ExportToRTStruct method) setRelativeThresholdOfPeaks() (Sisyphe.core.sisypheTracts.SisypheTracking method) setRenderer() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setRenderingAlgorithm() (Sisyphe.core.sisypheMesh.SisypheMesh method) setRenderLineAsTube() (Sisyphe.core.sisypheTools.LineWidget method) setRenderLinesAsTubesOff() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setRenderLinesAsTubesOn() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setRenderPointsAsSpheres() (Sisyphe.core.sisypheTools.LineWidget method) setRenderPointsAsSpheresOff() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setRenderPointsAsSpheresOn() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) setROI() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setROICollection() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) setROICollectionFromLabelVolume() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) setRotation() (Sisyphe.core.sisypheMesh.SisypheMesh method) setRotations() (Sisyphe.core.sisypheTransform.SisypheTransform method) setRoughness() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setSaveTag() (Sisyphe.core.sisypheDicom.ImportFromDicom method) setScalarColorVisibility() (Sisyphe.core.sisypheMesh.SisypheMesh method) setScalarColorVisibilityOff() (Sisyphe.core.sisypheMesh.SisypheMesh method) setScalarColorVisibilityOn() (Sisyphe.core.sisypheMesh.SisypheMesh method) setScalarsFromVolume() (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setScale() (Sisyphe.core.sisypheMesh.SisypheMesh method) setSeedCountPerVoxel() (Sisyphe.core.sisypheTracts.SisypheTracking method) setSeedsFromFAThreshold() (Sisyphe.core.sisypheTracts.SisypheTracking method) setSeedsFromRoi() (Sisyphe.core.sisypheTracts.SisypheTracking method) setSelectedColor() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) setSequence() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToAlgebraMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToApparentDiffusionMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToB0() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToBiasFieldMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToBrainstemMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToCerebellumMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToCerebralBloodFlowMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToCerebralBloodVolumeMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToCerebroSpinalFluidMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToCMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToContrastEnhancedCT() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToContrastEnhancedFLAIR() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToContrastEnhancedT1() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToContrastEnhancedT2() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToContrastEnhancedTOF() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToCorticalThicknessMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToDensityMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToDiffusionWeighted() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToDisplacementField() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToDistanceMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToDoseMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToECD() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToEchoPlanar() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToFDG() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToFLAIR() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToFPCIT() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToFractionalAnisotropyMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToGreyMatterMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToHMPAO() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToLabels() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToMask() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToMaximumMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToMeanMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToMeanTransitTimeMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToMedianMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToMinimumMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToPerfusionWeighted() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToPMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToProtonDensityWeighted() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToStandardDeviationMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToStructMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToSubCorticalGreyMatterMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToSusceptibilityWeighted() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToT1Weighted() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToT2Star() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToT2Weighted() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToTimeOfFlight() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToTimeToPicMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToTMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToWhiteMatterMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setSequenceToZMap() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setShapeTag() (Sisyphe.core.sisypheROI.SisypheROIFeatures method) setSignalCovariableByCondition() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setSignalCovariableByGroup() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setSignalCovariableBySubject() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setSignalGlobalCovariable() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setSignalNormalization() (Sisyphe.core.sisypheStatistics.SisypheDesign method) setSITKDisplacementFieldImage() (Sisyphe.core.sisypheTransform.SisypheTransform method) setSITKDisplacementFieldTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) setSITKImage() (Sisyphe.core.sisypheImage.SisypheBinaryImage method) (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheVolume.SisypheVolume method) setSITKTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) setSize() (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTransform.SisypheTransform method) setSliceDisplay() (Sisyphe.core.sisypheTools.NamedWidget method) setSlope() (Sisyphe.core.sisypheVolume.SisypheVolume method) setSpacing() (Sisyphe.core.sisypheImage.SisypheImage method) (Sisyphe.core.sisypheTransform.SisypheTransform method) setSpecular() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setSpecularPower() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setSphereProperties() (Sisyphe.core.sisypheTools.HandleWidget method) setSphereRadius() (Sisyphe.core.sisypheTools.HandleWidget method) setSphereVisibility() (Sisyphe.core.sisypheTools.HandleWidget method) setStatic() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setStepSize() (Sisyphe.core.sisypheTracts.SisypheTracking method) setStoppingCriterionToFAThreshold() (Sisyphe.core.sisypheTracts.SisypheTracking method) setStoppingCriterionToMaps() (Sisyphe.core.sisypheTracts.SisypheTracking method) setStoppingCriterionToROI() (Sisyphe.core.sisypheTracts.SisypheTracking method) setStructElement() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setSuffix() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setText() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.TextWidget method) setTextOffset() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setTextProperty() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) setTextVisibility() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) setThickness() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setThresholdMax() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setThresholdMin() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setThresholds() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setTolerance() (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) setTrackingAlgorithm() (Sisyphe.core.sisypheTracts.SisypheTracking method) setTrackingAlgorithmToDeterministicClosestPeakDirection() (Sisyphe.core.sisypheTracts.SisypheTracking method) setTrackingAlgorithmToDeterministicEulerIntegration() (Sisyphe.core.sisypheTracts.SisypheTracking method) setTrackingAlgorithmToDeterministicFiberOrientationDistribution() (Sisyphe.core.sisypheTracts.SisypheTracking method) setTrackingAlgorithmToDeterministicParallelTransport() (Sisyphe.core.sisypheTracts.SisypheTracking method) setTrackingAlgorithmToProbabilisticBootstrapDirection() (Sisyphe.core.sisypheTracts.SisypheTracking method) setTrackingAlgorithmToProbabilisticFiberOrientationDistribution() (Sisyphe.core.sisypheTracts.SisypheTracking method) setTrajectoryAngles() (Sisyphe.core.sisypheTools.LineWidget method) setTransform() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) setTransforms() (Sisyphe.core.sisypheVolume.SisypheVolume method) setTranslations() (Sisyphe.core.sisypheTransform.SisypheTransform method) setTubeProperties() (Sisyphe.core.sisypheTools.LineWidget method) setTubeRadius() (Sisyphe.core.sisypheTools.LineWidget method) setTubeVisibility() (Sisyphe.core.sisypheTools.LineWidget method) setType() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUndo() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setUndoOff() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setUndoOn() (Sisyphe.core.sisypheROI.SisypheROIDraw method) setUnit() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToADCunit() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToBq() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToBqMl() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToCC() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToCount() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToGy() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToHounsfield() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToMillimeter() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToPercent() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToPValue() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToRatio() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToSecond() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToSUV() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToTValue() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUnitToZScore() (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition method) setUserSettingsToDefault() (in module Sisyphe.core.sisypheSettings) setVersor() (Sisyphe.core.sisypheTransform.SisypheTransform method) setVertexColor() (Sisyphe.core.sisypheMesh.SisypheMesh method) setVertexQColor() (Sisyphe.core.sisypheMesh.SisypheMesh method) setVertexVisibilityOff() (Sisyphe.core.sisypheMesh.SisypheMesh method) setVertexVisibilityOn() (Sisyphe.core.sisypheMesh.SisypheMesh method) setVisibility() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheTools.AngleWidget method) (Sisyphe.core.sisypheTools.BoxWidget method) (Sisyphe.core.sisypheTools.DistanceWidget method) (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) (Sisyphe.core.sisypheTools.OrthogonalDistanceWidget method) (Sisyphe.core.sisypheTools.TextWidget method) (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) setVisibilityOff() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROI method) setVisibilityOn() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROI method) setVolume() (Sisyphe.core.sisypheDicom.ExportToDicom method) (Sisyphe.core.sisypheFiducialBox.SisypheFiducialBox method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) (Sisyphe.core.sisypheROI.SisypheROIFeatures method) (Sisyphe.core.sisypheROI.SisypheROIHistogram method) setVolumeDisplay() (Sisyphe.core.sisypheTools.NamedWidget method) setvtkLookupTable() (Sisyphe.core.sisypheLUT.SisypheLut method) setVTKMatrix3x3() (Sisyphe.core.sisypheTransform.SisypheTransform method) setVTKMatrix4x4() (Sisyphe.core.sisypheTransform.SisypheTransform method) setVtkProperty() (Sisyphe.core.sisypheMesh.SisypheMesh method) setVTKTransform() (Sisyphe.core.sisypheTransform.SisypheTransform method) setWholeBrainStatus() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) setWholeBrainStatusFromMasks() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) setWindow() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setWindowMax() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setWindowMin() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method) setWindowRange() (Sisyphe.core.sisypheLUT.SisypheLut method) setXmlDicomFilename() (Sisyphe.core.sisypheDicom.DicomToXmlDicom method) setXmlDicomReference() (Sisyphe.core.sisypheDicom.ExportToDicom method) setYRotation() (Sisyphe.core.sisypheImageAttributes.SisypheACPC method) shadingOff() (Sisyphe.core.sisypheMesh.SisypheMesh method) shadingOn() (Sisyphe.core.sisypheMesh.SisypheMesh method) shift() (Sisyphe.core.sisypheROI.SisypheROI method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheROI.SisypheROIDraw method) shiftSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) simpleITKToVTK() (in module Sisyphe.core.sisypheImage) sincSmooth() (Sisyphe.core.sisypheMesh.SisypheMesh method) Sisyphe.core.sisypheConstants module Sisyphe.core.sisypheDatabase module Sisyphe.core.sisypheDicom module Sisyphe.core.sisypheDownload module Sisyphe.core.sisypheFiducialBox module Sisyphe.core.sisypheImage module Sisyphe.core.sisypheImageAttributes module Sisyphe.core.sisypheImageIO module Sisyphe.core.sisypheLUT module Sisyphe.core.sisypheMesh module Sisyphe.core.sisypheMeshIO module Sisyphe.core.sisypheRecent module Sisyphe.core.sisypheROI module Sisyphe.core.sisypheSettings module Sisyphe.core.sisypheSheet module Sisyphe.core.sisypheStatistics module Sisyphe.core.sisypheTools module Sisyphe.core.sisypheTracts module Sisyphe.core.sisypheTransform module Sisyphe.core.sisypheVolume module Sisyphe.core.sisypheXml module SisypheACPC (class in Sisyphe.core.sisypheImageAttributes) SisypheAcquisition (class in Sisyphe.core.sisypheImageAttributes) SisypheApplyTransform (class in Sisyphe.core.sisypheTransform) SisypheBinaryImage (class in Sisyphe.core.sisypheImage) SisypheBundle (class in Sisyphe.core.sisypheTracts) SisypheBundleCollection (class in Sisyphe.core.sisypheTracts) SisypheColorTransfer (class in Sisyphe.core.sisypheLUT) SisypheDatabase (class in Sisyphe.core.sisypheDatabase) SisypheDesign (class in Sisyphe.core.sisypheStatistics) SisypheDialogsSettings (class in Sisyphe.core.sisypheSettings) SisypheDiffusionModel (class in Sisyphe.core.sisypheTracts) SisypheDisplay (class in Sisyphe.core.sisypheImageAttributes) SisypheDKIModel (class in Sisyphe.core.sisypheTracts) SisypheDSIDModel (class in Sisyphe.core.sisypheTracts) SisypheDSIModel (class in Sisyphe.core.sisypheTracts) SisypheDTIModel (class in Sisyphe.core.sisypheTracts) SisypheFiducialBox (class in Sisyphe.core.sisypheFiducialBox) SisypheFunctionsSettings (class in Sisyphe.core.sisypheSettings) SisypheIdentity (class in Sisyphe.core.sisypheImageAttributes) SisypheImage (class in Sisyphe.core.sisypheImage) SisypheLut (class in Sisyphe.core.sisypheLUT) SisypheMesh (class in Sisyphe.core.sisypheMesh) SisypheMeshCollection (class in Sisyphe.core.sisypheMesh) SisypheRecent (class in Sisyphe.core.sisypheRecent) SisypheROI (class in Sisyphe.core.sisypheROI) SisypheROICollection (class in Sisyphe.core.sisypheROI) SisypheROIDraw (class in Sisyphe.core.sisypheROI) SisypheROIFeatures (class in Sisyphe.core.sisypheROI) SisypheROIHistogram (class in Sisyphe.core.sisypheROI) SisypheSettings (class in Sisyphe.core.sisypheSettings) SisypheSHCSAModel (class in Sisyphe.core.sisypheTracts) SisypheSHCSDModel (class in Sisyphe.core.sisypheTracts) SisypheSheet (class in Sisyphe.core.sisypheSheet) SisypheStreamlines (class in Sisyphe.core.sisypheTracts) SisypheTooltips (class in Sisyphe.core.sisypheSettings) SisypheTracking (class in Sisyphe.core.sisypheTracts) SisypheTract (class in Sisyphe.core.sisypheTracts) SisypheTractCollection (class in Sisyphe.core.sisypheTracts) SisypheTransform (class in Sisyphe.core.sisypheTransform) SisypheTransformCollection (class in Sisyphe.core.sisypheTransform) SisypheTransforms (class in Sisyphe.core.sisypheTransform) SisypheVolume (class in Sisyphe.core.sisypheVolume) SisypheVolumeCollection (class in Sisyphe.core.sisypheVolume) sliceHeadSurface() (Sisyphe.core.sisypheImage.SisypheImage method) sliceIsEmpty() (Sisyphe.core.sisypheImage.SisypheImage method) solid3DBrush() (Sisyphe.core.sisypheROI.SisypheROIDraw method) solidBrush() (Sisyphe.core.sisypheROI.SisypheROIDraw method) sort() (Sisyphe.core.sisypheMesh.SisypheMeshCollection method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTools.ToolWidgetCollection method) (Sisyphe.core.sisypheTransform.SisypheTransformCollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) standardizeIntensity() (Sisyphe.core.sisypheImage.SisypheImage method) streamlineCenterOfMass() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineDistanceToMidPoint() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineFirstPoint() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineLastPoint() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineLength() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineMeanCurvature() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineMidPoint() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinePointFromDistance() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinePointIndex() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinePointIndexFromDistance() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinePrincipalDirection() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineScalarHistogramFromVolume() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineScalarsFromVolume() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlineScalarStatisticsFromVolume() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesClusterConfidenceFiltering() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesClustering() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesFromAtlas() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesMajorCentroid() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesPlaneSelection() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesRoiSelection() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesSphereSelection() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesToConnectivityMatrix() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesToDensityMap() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) streamlinesToPathLengthMap() (Sisyphe.core.sisypheTracts.SisypheStreamlines method) symDifference() (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) symmetricDifference() (Sisyphe.core.sisypheROI.SisypheROICollection method)

T

TextWidget (class in Sisyphe.core.sisypheTools) tFieldEulerCharacteristic() (in module Sisyphe.core.sisypheStatistics) tFieldExpectedClusters() (in module Sisyphe.core.sisypheStatistics) tFieldExpectedVoxels() (in module Sisyphe.core.sisypheStatistics) threshold3DBrush() (Sisyphe.core.sisypheROI.SisypheROIDraw method) thresholdBrush() (Sisyphe.core.sisypheROI.SisypheROIDraw method) thresholding() (Sisyphe.core.sisypheROI.SisypheROIDraw method) thresholdingBlob() (Sisyphe.core.sisypheROI.SisypheROIDraw method) thresholdingBlobSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) thresholdingSlice() (Sisyphe.core.sisypheROI.SisypheROIDraw method) thresholdMap() (in module Sisyphe.core.sisypheStatistics) tmapContrastEstimate() (in module Sisyphe.core.sisypheStatistics)

toClipboard() (Sisyphe.core.sisypheSheet.SisypheSheet method) toIndexes() (Sisyphe.core.sisypheROI.SisypheROI method) toLabelVolume() (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheVolume.SisypheVolumeCollection method) ToolWidgetCollection (class in Sisyphe.core.sisypheTools) tractCount() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) transforms (Sisyphe.core.sisypheVolume.SisypheVolume property) truncateIntensity() (Sisyphe.core.sisypheImage.SisypheImage method) tTopvalue() (in module Sisyphe.core.sisypheStatistics) tToVoxelCorrectedpvalue() (in module Sisyphe.core.sisypheStatistics) tToz() (in module Sisyphe.core.sisypheStatistics) tTozmap() (in module Sisyphe.core.sisypheStatistics) TVAL (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition attribute)

U

union() (Sisyphe.core.sisypheMesh.SisypheMesh method) (Sisyphe.core.sisypheROI.SisypheROICollection method) (Sisyphe.core.sisypheTracts.SisypheBundle method) (Sisyphe.core.sisypheTracts.SisypheBundleCollection method) unionBundle() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) update() (Sisyphe.core.sisypheMesh.SisypheMesh method) updateArrayID() (Sisyphe.core.sisypheVolume.SisypheVolume method)

updateBundle() (Sisyphe.core.sisypheTracts.SisypheTractCollection method) updateContourActor() (Sisyphe.core.sisypheTools.HandleWidget method) (Sisyphe.core.sisypheTools.LineWidget method) updatePySisyphe() (in module Sisyphe.core.sisypheDownload) updateQMenu() (Sisyphe.core.sisypheRecent.SisypheRecent method) updateTransforms() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) updateVolumeTransformsFromMoving() (Sisyphe.core.sisypheTransform.SisypheApplyTransform method) updateVTKLUT() (Sisyphe.core.sisypheImageAttributes.SisypheDisplay method)

V

validateContrast() (Sisyphe.core.sisypheStatistics.SisypheDesign method) visibilityOff() (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method)

visibilityOn() (Sisyphe.core.sisypheTracts.SisypheTract method) (Sisyphe.core.sisypheTracts.SisypheTractCollection method) voxelCorrectedpvalueTot() (in module Sisyphe.core.sisypheStatistics) voxelCorrectedpvalueToz() (in module Sisyphe.core.sisypheStatistics)

W

writeMeshToOBJ() (in module Sisyphe.core.sisypheMeshIO) writeMeshToSTL() (in module Sisyphe.core.sisypheMeshIO) writeMeshToVTK() (in module Sisyphe.core.sisypheMeshIO) writeMeshToXMLVTK() (in module Sisyphe.core.sisypheMeshIO) writeToJSON() (in module Sisyphe.core.sisypheImageIO)

writeToMINC() (in module Sisyphe.core.sisypheImageIO) writeToNIFTI() (in module Sisyphe.core.sisypheImageIO) writeToNRRD() (in module Sisyphe.core.sisypheImageIO) writeToNumpy() (in module Sisyphe.core.sisypheImageIO) writeToVTK() (in module Sisyphe.core.sisypheImageIO)

X

XmlDicom (class in Sisyphe.core.sisypheDicom) XmlROI (class in Sisyphe.core.sisypheXml)

XmlStreamlines (class in Sisyphe.core.sisypheXml) XmlVolume (class in Sisyphe.core.sisypheXml)

Z

zFieldEulerCharacteristic() (in module Sisyphe.core.sisypheStatistics) zFieldExpectedClusters() (in module Sisyphe.core.sisypheStatistics) zFieldExpectedVoxels() (in module Sisyphe.core.sisypheStatistics) zmapContrastEstimate() (in module Sisyphe.core.sisypheStatistics)

ZSCORE (Sisyphe.core.sisypheImageAttributes.SisypheAcquisition attribute) zTopvalue() (in module Sisyphe.core.sisypheStatistics) zTot() (in module Sisyphe.core.sisypheStatistics) zToVoxelCorrectedpvalue() (in module Sisyphe.core.sisypheStatistics)