API

Contents:

Packages
Sisyphe.core.sisypheConstants
- External packages/modules
- addPrefixSuffixToFilename()
- addPrefixToFilename()
- addSuffixToFilename()
- getATROPOSPath()
- getBitmapExt()
- getBrainVoyagerVMRExt()
- getBrainVoyagerVOIExt()
- getDISTALPath()
- getDatatypes()
- getDicomExt()
- getFloatStdDatatypes()
- getFreeSurferExt()
- getICBM152Path()
- getICBM452Path()
- getID_ATROPOS()
- getID_DISTAL()
- getID_ICBM152()
- getID_ICBM452()
- getID_NAC()
- getID_SPL()
- getID_SRI24()
- getImageExt()
- getIntStdDatatypes()
- getJsonExt()
- getLibraryDataType()
- getLutExt()
- getMincExt()
- getNACPath()
- getNiftiCompressedExt()
- getNiftiExt()
- getNrrdExt()
- getNumpyExt()
- getOrigin_ICBM152()
- getRegularDirections()
- getSPLPath()
- getSRI24Path()
- getShape_ICBM152()
- getSisypheDirections()
- getSisypheExt()
- getSisypheROIExt()
- getSupportedITKDatatypes()
- getSupportedITKStdDatatypes()
- getTemplatePath()
- getTemplatesID()
- getTractsExt()
- getVTKDirections()
- getVtkExt()
- isATROPOS()
- isDISTAL()
- isICBM152()
- isICBM452()
- isITKImageSupportedType()
- isITKSupportedStdType()
- isITKSupportedType()
- isNAC()
- isSPL()
- isSRI24()
- isTemplateID()
- isUint8ITKImage()
- isValidDatatype()
- isValidLibraryName()
- listToStr()
- removeAllPrefixesFromFilename()
- removeAllSuffixesFromFilename()
- removeSuffixNumberFromFilename()
- replaceDirname()
Sisyphe.core.sisypheDatabase
- External packages/modules
- SisypheDatabase
Sisyphe.core.sisypheDicom
- External packages/modules
- DicomToXmlDicom
- DicomUIDGenerator
- ExportToDicom
- ExportToRTStruct
- ImportFromDicom
- ImportFromRTDose
- ImportFromRTStruct
- XmlDicom
- getAcquisitionFromDicom()
- getDicomImageModalities()
- getDicomModalities()
- getDicomRTModalities()
- getDiffusionParametersFromDicom()
- getIdentityFromDicom()
- loadBVal()
- loadBVec()
- mosaicImageToVolume()
- removeSuffixNumberFromFilename()
- saveBVal()
- saveBVec()
Sisyphe.core.sisypheDownload
- External packages/modules
- downloadFromHost()
- installFromHost()
- updatePySisyphe()
Sisyphe.core.sisypheFiducialBox
- External packages/modules
- SisypheFiducialBox
Sisyphe.core.sisypheImage
- External packages/modules
- SisypheBinaryImage
- SisypheImage
- numpyToVtkImageData()
- simpleITKToVTK()
Sisyphe.core.sisypheImageAttributes
- External packages/modules
- SisypheACPC
- SisypheAcquisition
- SisypheDisplay
- SisypheIdentity
Sisyphe.core.sisypheImageIO
- External packages/modules
- compareDataElementsBetweenDatasets()
- convertImageToAxialOrientation()
- convertSITKtoVTK()
- convertVTKtoSITK()
- extractDataElementValuesFromDatasets()
- flipImageToVTKDirectionConvention()
- isDicom()
- readFromBitmap()
- readFromBrainVoyagerVMR()
- readFromDicomDirectory()
- readFromDicomFilenames()
- readFromDicomSeries()
- readFromFreeSurferMGH()
- readFromMINC()
- readFromNIFTI()
- readFromNRRD()
- readFromNumpy()
- readFromSisyphe()
- readFromSisypheROI()
- readFromVTK()
- readImage()
- writeToJSON()
- writeToMINC()
- writeToNIFTI()
- writeToNRRD()
- writeToNumpy()
- writeToVTK()
Sisyphe.core.sisypheLUT
- External packages/modules
- SisypheColorTransfer
- SisypheLut
- lutConversion()
- saveColormapBitmapPreview()
Sisyphe.core.sisypheMesh
- External packages/modules
- SisypheMesh
- SisypheMeshCollection
Sisyphe.core.sisypheMeshIO
- External packages/modules
- readMeshFromOBJ()
- readMeshFromSTL()
- readMeshFromVTK()
- readMeshFromXMLVTK()
- writeMeshToOBJ()
- writeMeshToSTL()
- writeMeshToVTK()
- writeMeshToXMLVTK()
Sisyphe.core.sisypheRecent
- External packages/modules
- SisypheRecent
Sisyphe.core.sisypheROI
- External packages/modules
- SisypheROI
- SisypheROICollection
- SisypheROIDraw
- SisypheROIFeatures
- SisypheROIHistogram
Sisyphe.core.sisypheSettings
- External packages/modules
- SisypheDialogsSettings
- SisypheFunctionsSettings
- SisypheSettings
- SisypheTooltips
- getUserPath()
- getUserPySisyphePath()
- getUsername()
- initPySisypheUserPath()
- setUserSettingsToDefault()
Sisyphe.core.sisypheSheet
- External packages/modules
- SisypheSheet
Sisyphe.core.sisypheStatistics
- External packages/modules
- SisypheDesign
- autocorrelationsEstimate()
- clusterCorrectedpvalueToExtent()
- clusterUncorrectedpvalueToExtent()
- conjunctionFisher()
- conjunctionMudholkar()
- conjunctionStouffer()
- conjunctionTippett()
- conjunctionWorsley()
- convolveModelHRF()
- expectedVoxelsPerCluster()
- extentToClusterCorrectedpvalue()
- extentToClusterUncorrectedpvalue()
- getBoxCarModel()
- getDOF()
- getHRF()
- getHighPass()
- isRankDeficient()
- modelEstimate()
- pCorrectedBonferroni()
- pUncorrectedBonferroni()
- pvalueTot()
- pvalueToz()
- qFDRTot()
- qFDRToz()
- reselCount()
- tFieldEulerCharacteristic()
- tFieldExpectedClusters()
- tFieldExpectedVoxels()
- tToVoxelCorrectedpvalue()
- tTopvalue()
- tToz()
- tTozmap()
- thresholdMap()
- tmapContrastEstimate()
- voxelCorrectedpvalueTot()
- voxelCorrectedpvalueToz()
- zFieldEulerCharacteristic()
- zFieldExpectedClusters()
- zFieldExpectedVoxels()
- zToVoxelCorrectedpvalue()
- zTopvalue()
- zTot()
- zmapContrastEstimate()
Sisyphe.core.sisypheTools
- External packages/modules
- AngleWidget
- BoxWidget
- DistanceWidget
- HandleWidget
- LineWidget
- NamedWidget
- OrthogonalDistanceWidget
- TextWidget
- ToolWidgetCollection
Sisyphe.core.sisypheTracts
- External packages/modules
- SisypheBundle
- SisypheBundleCollection
- SisypheDKIModel
- SisypheDSIDModel
- SisypheDSIModel
- SisypheDTIModel
- SisypheDiffusionModel
- SisypheSHCSAModel
- SisypheSHCSDModel
- SisypheStreamlines
- SisypheTracking
- SisypheTract
- SisypheTractCollection
Sisyphe.core.sisypheTransform
- External packages/modules
- SisypheApplyTransform
- SisypheTransform
- SisypheTransformCollection
- SisypheTransforms
Sisyphe.core.sisypheVolume
- External packages/modules
- SisypheVolume
- SisypheVolumeCollection
- multiComponentSisypheVolumeFromList()
Sisyphe.core.sisypheXml
- External packages/modules
- AbstractXml
- XmlROI
- XmlStreamlines
- XmlVolume